DreINT0181015 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21622796-21623522:-
Coord C1 exon
chr9:21623408-21623522
Coord A exon
chr9:21623039-21623407
Coord C2 exon
chr9:21622796-21623038
Length
369 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
GTGAGTATTTTTCCTTTGAGGTT
3' ss Score
2.12
Exon sequences
Seq C1 exon
CATTTGCAGGACAAAGGAAGGACAGATGACCTCTTTAATGACTCACAGTATGAAATGTTTGGGGAGGAACTGAACAAGCTCCTCAAAGACTGGCAACCCAGTGTTCTTCCGGATG
Seq A exon
GTAAATACACTTATAAGTGTGAAAATGTGCAAAGATCACTGTACTGTATTTTCCAGAATATAAATCACATCTTGTATAATCCAACAAGCTTAAATATTCACCTTTTTGATCACATTTTGATAATCTTTCTTGTTTTAAAATGTCCAGTGATTATAACCATTGCTGTTCACATTCTGAAAAAGATTGTTGACTCAATCCAACTATGAGGACATTTCAAACTAATTAGTGACCTGCATATGTAGTATGGATACTTCAAATTGATTCAATTGTTAAATGTAATTAAGGGTTTGAAATACCTTAACATGGTGTGCTTGACCTATTAAAAACAGTGTTGCTCCAGTGTTTAAGTGTGAGTATTTTTCCTTTGAG
Seq C2 exon
GTTCTCGGTGGAGTCGTGTTGAAGAGCAATATCTGTGGAGCAGCGGACAGCTTGGAGAACAGGCGCCTTCTGTCCTGCTGAGATCTGTATTCTATCTCAACACCAAATACTTTGGTCTTCGCACCCCAGAACAGCACTTACGCCTCTCATTTGCAAACGTCTATGGCCCAAGCAGCTCGAAACCGCACAGCCATGAGACCACCGTCTGTATACGCATCCCCTCCATCTCACAGGAGCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(46.6=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGACAAAGGAAGGACAG
R:
CATGCTGCTCCTGTGAGATGG
Band lengths:
354-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]