BtaINT0164745 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84695442-84695976:+
Coord C1 exon
chrX:84695442-84695592
Coord A exon
chrX:84695593-84695803
Coord C2 exon
chrX:84695804-84695976
Length
211 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCTGTTGCCCCCTTTCCAGGCT
3' ss Score
8.58
Exon sequences
Seq C1 exon
GACCAGGTGTTCCAGTTCTGCTGTCGTGATTGCTGTGAGGACTTCAAGCGCCTCCGGGGTGTGGTGTCCCAGTGTGAGCATTGCCGGCAGGAGAAACTCCTGCATGAGAAGCTCCGATTCAGTGGGGTGGAGAAGAGCTTCTGCAGTGAAG
Seq A exon
GTAAGGAGATGGGGAAGGGCCAGAGAGTCCTGTACCTTGCAGCTGGGAAGAACAGCAGATTAAGTAAGGTAGGCTTGCAGGGTGGTCCATTCTGCTCAGGACACTCTGGAGGCTGTTAAACATTTCAGGTGCACTGCCTTGAGAAAGTTGGGTCTCATGGCCACATGGAGATCTCATGTCTCTGGACTCTTCTCTGTTGCCCCCTTTCCAG
Seq C2 exon
GCTGTGTGCTGCTATACAAACAGGACTTCACTAAGAAGCTGGGATTATGCTGTATCACTTGTACCTATTGCTCCCAGACCTGCCAGCGCGGAGTCACTGAGCAGCTGGATGGCAGCACCTGGGACTTCTGCAGCGAGGACTGTAAGAGCAAGTACCTGCTGTGGTACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
A:
NA
C2:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGTGTTCCAGTTCTGC
R:
TCTTACAGTCCTCGCTGCAGA
Band lengths:
298-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]