RnoINT0169135 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71308110-71308682:-
Coord C1 exon
chrX:71308532-71308682
Coord A exon
chrX:71308283-71308531
Coord C2 exon
chrX:71308110-71308282
Length
249 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCCTGTTCTCTCCTTTCTAGGCT
3' ss Score
12.04
Exon sequences
Seq C1 exon
GACCAGGTCTTCCAGTTCTGCTGCCGTGATTGCTGTGAGGACTTCAAGCGGCTTCGGGGTGTGGTATCCCAGTGTGAGCACTGCCGGCAGGAAAAGCTCCTGCATGAGAAACTCCGATTCAGTGGGGTAGAGAAAAGCTTCTGCAGTGAAG
Seq A exon
GTAAGGGAGTGAGCTAGCAACCAAGGCCCTGTCTCCTATGACCTGGGAGGATGGAGAAGGGAAGAGCAAGGCTTAGAAAGCAGGGTGTAAGCTGTAAGCCCTGCCAGGATGCTCTACCCCACTTATGCTAAGGCTTTAGGTGCAGGGCTGTTCTGAGGAGGTTTCAGAAGTAGCCTTTTGGAAAGACTGAGTTGAACACCTGTGCGTAACTCCGTCTCCAGGCACTCTTTCCTGTTCTCTCCTTTCTAG
Seq C2 exon
GCTGTGTGCTGCTATACAAGCAAGATTTTACTAAGAAGCTGGGCTTGTGCTGTATCACTTGTACTTACTGCTCCCAAACCTGTCAGCGTGGAGTCACTGAGCAACTGGATGGAAGCACCTGGGACTTTTGCAGCGAGGACTGTAAGACCAAGTACCTGTTATGGTACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
A:
NA
C2:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTCTTCCAGTTCTGCT
R:
ACAGTCCTCGCTGCAAAAGTC
Band lengths:
293-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]