BtaINT0164769 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110967197-110968297:-
Coord C1 exon
chr3:110968147-110968297
Coord A exon
chr3:110967370-110968146
Coord C2 exon
chr3:110967197-110967369
Length
777 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ACCTTCTCTGATTTTTTTAGGTT
3' ss Score
11.71
Exon sequences
Seq C1 exon
GGTAAAATGTTTCAGTTCTGTGGCAAAAATTGTTCTGATGAATATAAGAAAATAAATAATGTAATGGCAATGTGTGAATATTGTAAAATTGAGAAAATTATAAAGGAGACTGTACGATTCTCAGGGGCTGACAAGTCATTCTGTAGTGAAG
Seq A exon
GTAAAGATAGAAGATTATCTTCCCTACCGAGCATGTTGGTTATTTGAAAAGTAGTTGATAATTTAAGCTGTCACTGTGTAAGTTTTATCTATTTCATCCTTTGTATATAACACGAAAACCTTTTGTTTTGTTTATACTTGTTCACTCTTTTCTGGTATAATCCTTCATATTATAAAGATGTTAAAATGAAGGAAAAGATCTTCACAGTATATAGCAAAAATGATGGTGATGGGAGAAATGTTTAATGTTATTAGATTGATGAGCATCTTTTAGTTCTTATATTTATTTCTAAAAGGAACTGCTTAAATTTTCGTAGCATCCTAAGATTATACTTTTTTTTTTTAACATCCATTATATTTCTGAATATGCAAATTAGCATGTCTTCCTTATTTAGATGACTGTAAGTTTAGAATGTTTTGTTTTACTCTAAAACCATGCAGAAGTAACCTCCTAGTCTAGTGGCTTTCAAACCTCTTGACCACATGCAGAAAACATACATTTTACATTGTGACCCAGTGTATGATCACATACCCAAAGAAAACAAGTTTTATAAAACAAAACTGACTTTTATTATATATGATGGACTGTAATATTTGCTCTGCTGTCTTATTTTGTTTAAAAAAAGAAAATGGTAGTATCAATCCTCTAAATTGATTTCTTGATCTACTAATTGGTGAGAACCCAACTGTGCAAACTTTATCATAGGGCATTTAAATTAAAGATGTAAATACTTACTATTCTCTCTAATGTTAATTTTACCTTCTCTGATTTTTTTAG
Seq C2 exon
GTTGCAAATTGCTTTATAAACATGACTTGGCAAAACGCTGGGGAAATCACTGTAAAATGTGCAGTTATTGTTTACAGACATCTCCCAAATTGGTACAGAATAATTTAGGGGGGAAAGTAGAAGAGTTTTGTTGTGAAGAATGCATGTCCAAATATACAGTTTTGCTCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(7.7=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAAATGTTTCAGTTCTGTGGCA
R:
GAGCAAAACTGTATATTTGGACATGC
Band lengths:
318-1095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]