HsaINT0186026 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35853055-35854683:+
Coord C1 exon
chr1:35853055-35853205
Coord A exon
chr1:35853206-35854510
Coord C2 exon
chr1:35854511-35854683
Length
1305 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTATCTTTCCTGATTTTTAGGTT
3' ss Score
11.51
Exon sequences
Seq C1 exon
GGCAAAATGTTTCAGTTCTGTGGCAAGAATTGTTCTGATGAATATAAGAAAATAAATAATGTAATGGCAATGTGTGAATATTGTAAAATTGAGAAAATTGTAAAGGAGACTGTTCGGTTCTCAGGTGCTGACAAGTCATTCTGTAGTGAAG
Seq A exon
GTAAAGACAGAAGATTATCTTACCTACTGAGCATGTTGGTTGTTTTAAAGCAGTTGATGATGATTTAAGCTTTCACTGTCTAAGTTAATCTGTTTTATTGTTTATGTATAACGTAAATGCCTTTTCGATTCATTTACACTTAGTTCATTCTTTTTTGATCTAGTTTTCTTATATTATGTAGCTGTTAAAATGAAGTGAAAGATTTGCAAAGTATAATGCAGAAGAAGATGATGTGAAAAACATTTAACATCCTTAGGTTCCCCATTATTAGGTTGATCGGGACCTCAAAGAGCTTCTAGTTCGTGTACTTATTTCTAAATGGGATGCCTTAAATTATGGTAACATTCTAAGTTTATACTTTTATTGTCTTAAACAGCCATTATATTTCTGAATATAAATGGCTTGAATATGCAAATTAATATGTGGAAGATTGTTTTCCTTAGATAACTCTTCTATATGTTTATAATGTTTTATTTTACTCTAAAGCTGTATTAGCCTTCTAGAGCAAGGGCTTTCAAACCTTTTGATAACACCAAAGAAGAAATACATTTACACTGTGACCCAGTATATTTTCACATACCTAAATAAAAGTTTTTTTTGTTTTTGTTTTTGTTTTTTGAGACAGAGTCTTGCTTTGTCACCCAGGCTGGAATGCCATGGAGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAACCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGCTTCACCATGTTGGCCAGGCTGGTCTCCAACTCCTGACCTCAGGTGATCCACCCACTTTGGCCTCCCAGAGTGCTGGGATTACAGGTGTGAGCCACTACGCCCAGCCCCAAAAGTTTCATGAAATAAAATCGATGCAGTTTAATATTTTCTCTTCTGTGCTATCCTGTCTTATATCATTTAAAACAAAAACAAAAACAAAGCAAAACAAAAACTAGTATAGATACTCTAAAAAATCAAGATACTCTGTGAACTGGTCAGGACCCAAGTGTGAAAACTTTGTCCTAGACCACTTATTTTTCTTTTTTTTGTTTTTGTTTTTATTTGACATGGGGTCTTGCCATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCACTCCTCCCGCCAGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGCACCGGGCCTGTCCTAGGCCATTTAAAGTTGCAGAAAACTAATACTTCTACCTAATGTTAATTTTATCTTTCCTGATTTTTAG
Seq C2 exon
GTTGCAAATTGCTTTATAAACATGACTTGGCAAAACGCTGGGGAAATCACTGTAAAATGTGCAGTTATTGTTTACAGACATCTCCCAAATTGGTACAGAATAATTTAGGAGGGAAAGTGGAAGAGTTCTGTTGTGAAGAATGCATGTCCAAATATACAGTTTTGTTCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(15.0=10.2),PF064679=zf-FCS=WD(100=67.8),PF064679=zf-FCS=PU(2.7=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAATGTTTCAGTTCTGTGGC
R:
GAACAAAACTGTATATTTGGACATGC
Band lengths:
318-1623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)