DreINT0139545 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14747778-14748306:-
Coord C1 exon
chr17:14748156-14748306
Coord A exon
chr17:14747951-14748155
Coord C2 exon
chr17:14747778-14747950
Length
205 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
ATTCATTTTTCTTTTTATAGGCT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGTCATGCAGGTTTGTTCTGTTCGCGAGCGTGCTGTGACACATATAAGAAGGAAGGCAACGTAAAAGCTTTATGCGAGTACTGCAAACTAGAGAAAGTGGTCAAAGACATTATTACATACGAAAAACAGCCCAGATCTTTCTGTTGTGAAG
Seq A exon
GTTGGTTATACTTATGTTATATATTTATTATGCTTGCATTGGTATAATTGTATACTTATGTCATAATACTAACATGTTTATAAGTGTCTTTGGTTAAGAGTCGAACCATGTGATTTAATTGTAAATTTAACGTGGTTCACGTGCCATTGTTACAATTAAATGTTGAATTACTCTAGTTAATTTACATTCATTTTTCTTTTTATAG
Seq C2 exon
GCTGTAAACTTCTTTTCAAGCATGAGCTTGCCAAACGACATGGAGGTCAATGCCGGGTTTGTGCCTACTGTCAAAACATGACCCACAAAACCATTCAGAACTTTTTTGGGGGGAAACTGGAGGAGTTTTGCACAGAGGAATGCATGTCGCTCTACACTGTCCTCTTTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(37.8=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(2.5=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCGTGCTGTGACACATAT
R:
AGAGGACAGTGTAGAGCGACA
Band lengths:
292-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]