BtaINT0164788 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110978432-110979009:-
Coord C1 exon
chr3:110978925-110979009
Coord A exon
chr3:110978688-110978924
Coord C2 exon
chr3:110978432-110978687
Length
237 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTTTCAATTTTTTTTTAAAGCTC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGCGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
Seq A exon
GTAAGAAACAGAACTGAATGAATGAATCATGTTTGTTTATTCTGACCAGTGTGAGTGAGAGGAAGTACCTACTTGTATTAGTAAACTAGGCAGTTCTCTCTGCCTGTTTAGAATGGCTTTAATTGTGCTTTGCATAATTAGTGTTGGATTTCAAAACTGGTTCTAGAAGAGAAAGAAAGGATGCCTACTTAAAATTCATGGTAAAAAGTAAAACTTTTTTTCAATTTTTTTTTAAAG
Seq C2 exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCACTGGCGTCATCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCCTGTTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGGTCTACGCAGCTGTTCTGCTCTACATTGTGCCTCACTGGATATACAGTTCCACCTGCCCGCCCACCGCCTCCTCCCACTAAGAAAACTTGCTCAAGTTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAGAGGGGGAACTGAAA
R:
TTTCTTAGTGGGAGGAGGCGG
Band lengths:
294-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]