RnoINT0169181 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144931944-144932532:-
Coord C1 exon
chr5:144932448-144932532
Coord A exon
chr5:144932200-144932447
Coord C2 exon
chr5:144931944-144932199
Length
248 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTTTTCCTTTTTTTTTAAAGCTC
3' ss Score
10.12
Exon sequences
Seq C1 exon
GAGTATGGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTGG
Seq A exon
GTAAGAATCAGACCTGAATAAATCAATTGTATTTATTCCAGCCAGTATCAATGAGAGGCCATTTCTACTTGTGTTAATAAACTAGATGTCCTCTGTTTTAGAATCCTTTATATTGTATATTCTATAATTACTATTAGATTCCAAACTAGCTATAAAAGAGAAAGTAACAGTGCATAAAATAGAAGATTAAAAAGTAAAAAAAATTTTTTTTTTTTTGCTTTGAATGTTCTTTTCCTTTTTTTTTAAAG
Seq C2 exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCTCTGGCATCACCTGGCATGAATAAAATGCTTCCTGCAGTTCCAGCCACAGCTATTCGAGTTTCCTGCTCTGGTTGTAAAAAAATCCTCCAGAAGGGACAGACGGCTTATCAGAGGAAAGGGTCAACTCAGCTTTTCTGCTCCACCCTGTGCCTCACGGGATACACAGTGCCACCTGCCCGCCCACCGCCGCCTCTCACCAAGAAGACTTGTTCCAGTTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.198
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGGTCATGGCCAACAGC
R:
GCAGGTGGCACTGTGTATCC
Band lengths:
292-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]