HsaINT0186047 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35835630-35836228:+
Coord C1 exon
chr1:35835630-35835714
Coord A exon
chr1:35835715-35835972
Coord C2 exon
chr1:35835973-35836228
Length
258 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTTTTTTTTTTTTTTTAAAGCTC
3' ss Score
10.15
Exon sequences
Seq C1 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGCCCTCTTG
Seq A exon
GTAAGAAACAGACCTGAATAAATGGATTGTGTATGTTCTGACCAATATGAATGAGAAGAAATTCTGCTTGTATTAATAAACCAGGCAGCTCTCTCTACCCACTTAGGATGCCTTTAAATTGTATATTGCATAATTACTGTTGGGTTTCAAGACTAGTTCTAGAAGAGAAAGAAAGAATGTCTACTTAAAATTCATGGTAAAAAGTAAAACATTTTTTTCTTTCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAG
Seq C2 exon
CTCCACAGTTGACTACTGGCTTTCAGCCCTCACTGGCGTCATCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCCTGTTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGGTCTACTCAGCTATTCTGCTCCACACTGTGCCTCACTGGATATACAGTTCCACCTGCCCGCCCACCGCCTCCTCTCACCAAGAAAACTTGTTCAAGTTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAGAGGGGGAACTGAAA
R:
TTTTCTTGGTGAGAGGAGGCG
Band lengths:
295-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)