BtaINT0164790 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110973607-110974106:-
Coord C1 exon
chr3:110973932-110974106
Coord A exon
chr3:110973820-110973931
Coord C2 exon
chr3:110973607-110973819
Length
112 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TGTTACTTTATAATTTCTAGATT
3' ss Score
7.76
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAATACCACCACTAGTAAAGATTTTTGTAGTCAGTCGTGTTTGTCAACATATGAACTGAAAAGAAAACCTGTTGTTACCATAAATACAAATAGCATTTCAACTAAATGCAGCATGTGTCAGAAGAATGCTGTT
Seq A exon
GTAAGTTATCTTTTTTACTGTACTGGGGGAAAGAGTCTGGTATTTGTGCTTAAACGACAGCTTTTGATGATCTTTGCTTGTTGTTTCTAAGTTGTTACTTTATAATTTCTAG
Seq C2 exon
ATTCGACATGAAGTTAATTACCAGAATGTGGTACATAAACTTTGCAGTGATGCCTGCTTCTCTAAATTTCGCTCTGCTAACAATCTCACCATGAACTGTTGTGAAAACTGTGGGGGTTACTGCTACAGTGGCTCTGGACAATGCCACATGCTTCAGATAGAGGGACAGTCTAAGAAGTTTTGTAGTTCAACATGTGTCACAGCATATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGTGATCAGTGCCCAGT
R:
TGGTGAGATTGTTAGCAGAGCG
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]