RnoINT0169183 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144924321-144924818:-
Coord C1 exon
chr5:144924644-144924818
Coord A exon
chr5:144924534-144924643
Coord C2 exon
chr5:144924321-144924533
Length
110 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CTTTATTTTGTGCTTCTTAGATT
3' ss Score
9.06
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAATTTGAAAATAGCACCACCAGTAAGGATTTTTGCAGTCAGTCATGCTTGTCAACATATGAACTGAAAAAAAAGCCCATTGTTACCATAAATACAAATAGCATTTCAACCAAGTGCAGCATGTGTCAGAAGAACGCTGTT
Seq A exon
GTAAGTCAACTTTCTTGCTTTGCTTGAATGAGTAAGTTTAATGTTTATGCTTAAAGAACAGTGTTTGATTCTTTGTGTTTGATATTTTGGCTTTATTTTGTGCTTCTTAG
Seq C2 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTCTCTAAGTTCCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGCTATAGTGGCTCTGGACAGTGCCATGTGCTTCAGATTGAGGGACAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGATGTGATCAGTGCCCA
R:
GTGAGGTTGTTAGCAGAGCGG
Band lengths:
250-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]