GgaINT0137483 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4315727-4316228:-
Coord C1 exon
chr23:4316054-4316228
Coord A exon
chr23:4315940-4316053
Coord C2 exon
chr23:4315727-4315939
Length
114 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATG
5' ss Score
4.46
3' ss Seq
TGTCCTTTCTTCTCTTCCAGATC
3' ss Score
14.3
Exon sequences
Seq C1 exon
AGAAATTCTAAATCCAAAGGATGTAATCACTGCCCAGTTTGACAATACAAATTCCAGTAAGGATTTCTGCAGCCAGTCATGTCTTTCTACGTATGAAATGAAAAGGAAACCTATTATTACTATTCACACTAACAGCATTTCAACCAAGTGCAGCATGTGCCAGAAGAATGCAGTG
Seq A exon
GTAATGGCAAACTTCTTTTCCATTTAAGTTTCCTTTAAGTCAGGGAACTTGCTATCTGAGAGATGAGCTTGCATTTTCTTTCTGTTCTTGTTAATGTCCTTTCTTCTCTTCCAG
Seq C2 exon
ATCAGACATGAAGTGAATTACCAGAACGTCGTACACAAGCTCTGCAGTGATGCCTGCTTCTCCAAGTTCCGCTCTGCTAATAACTTAACCATGAACTGCTGTGAGAATTGTGGAGGTTACTGCTACAGTGGGTCTGGGCAGTGTCGCATGCTGCAGATAGAGGGACAGTCAAAAAAGTTCTGCAGTTCGACATGTGTGACACTGTACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTCAACCAAGTGCAGCA
R:
TGTCACACATGTCGAACTGCA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]