BtaINT0164796 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36502642-36503478:+
Coord C1 exon
chr12:36502642-36503146
Coord A exon
chr12:36503147-36503384
Coord C2 exon
chr12:36503385-36503478
Length
238 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCCCGTCTTTAACTTCACAGACC
3' ss Score
9.54
Exon sequences
Seq C1 exon
GTTCTTTGGCATGGGTGAATGTTCAGCAGGAAGATTAGACTTGACTGAACAGACTCCTATCTTATTAGGGAGTAAAGCCATGGCAGCTAGTCTCATGGATGTAGGAGACTCATTTGGTGACCCAGCTAGTCCGTTAGTTAATAGATCTAGAAACTCATTGGTGGAAGGTGATAATGGTGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAAGTTCTGCTCCAGTAATAGCTGATCAAAGACATTTTGTATTTCCTGCATCAAGAAATAAAAAGCTTCAAGGACATTATTCTGTAATTCTTCCTTCCTCAAGATATTTGGCTTCTCAGAAGGGAAATACAAGTGAGACAATTGTTATTGATGATGAAGAGGACATGGAAACAAATGGAAGGGAAAAGACAGTTTCTTCCAGTTTTATTGAATGGGGATTTCCTGGAACTAAAAACAGAACCAAAGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
Seq A exon
GTAAATGCAGGAATGGGTAATGGTGTTATCACTACAGAATCGACTGTGAAATTCATATTACTAATGTTACAACTTTAGAAGCAGGTTTTAAGCTCTGAATGATGGGCGAGATATGAACTTAATGATTACAAATATAACATCACTATAGAATTCCAACTTGGGAGATGTCGCTAAAGGACTTCAGTCAAGTAATTTTGGTGTTAATATGCAAACATACACCCCGTCTTTAACTTCACAG
Seq C2 exon
ACCAAGACTGCAGTAGGACCTTTTAATCCTGGTAGAATGAATGTGGCAGGAGGTGAATTTCAGAATGGAGGATTTACAACTCATCATAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167:ENSBTAT00000009433:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=NA C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTGCTCCAGTAATAGCTGA
R:
AGGTCCTACTGCAGTCTTGGT
Band lengths:
303-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development