HsaINT0186053 @ hg19
Intron Retention
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger, MYM-type 5 [Source:HGNC Symbol;Acc:13029]
Coordinates
chr13:20425495-20426330:-
Coord C1 exon
chr13:20425829-20426330
Coord A exon
chr13:20425589-20425828
Coord C2 exon
chr13:20425495-20425588
Length
240 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCCCATCTTTAACTCCACAGACC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGGGGATTCATTTGGTCATCCAGCTTGTCCTTTAGTCAGTAGATCTAGGAACTCACCAGTGGAAGATGATGATGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAATTTCTGCTCCAGCAATAGCTGATCAAAGAAACTTCATATTTGCATCATCAAAAAATGAAAAGCCTCAAGGAAATTATTCTGTAATTCCTCCTTCTTCAAGAGATTTGGCATCTCAGAAAGGAAATATAAGTGAGACAATTGTTATTGATGATGAAGAGGACATAGAAACAAATGGAGGAGCAGAGAAAAAGTCTTCCTGTTTTATCGAATGGGGACTTCCTGGAACTAAAAACAAAACCAACGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
Seq A exon
GTAAATGCAGGAATGGGTAATAGTGGTATCACTACAGAATTGACTCTGAAATACATTATTACTAATGTTACAACCTTAGAAACAGGTATAAGCTCTGTGAATGCTGGGCAAGATGTGAACATAATTATTACATATAAAACATCACTATAGAATACCAACTTGGGAGATGTCGCTAAAGGACTTCAGTCAAGTAATTTTGGTGTTAATATACAAACGTACACCCCATCTTTAACTCCACAG
Seq C2 exon
ACCAAGACTGGAGTAAGACCTTTTAACCCTGGTAGAATGAATGTGGCAGGAGACTTATTTCAGAATGGAGAATTTGCAACTCATCATAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950-ZMYM5:NM_001039649:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=0.766
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATAGCTGATCAAAGAAACTTCA
R:
AAGGTCTTACTCCAGTCTTGGT
Band lengths:
292-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)