RnoINT0169185 @ rn6
Intron Retention
Gene
ENSRNOG00000029220 | Zmym5
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37056224-37056892:-
Coord C1 exon
chr15:37056488-37056892
Coord A exon
chr15:37056315-37056487
Coord C2 exon
chr15:37056224-37056314
Length
173 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCTCATCTTTAACTTCACAGACC
3' ss Score
8.3
Exon sequences
Seq C1 exon
ATGGAAGCTCATCTGGAAGATGCAGAATCATCTGATGGCCCAAGTAGTTCTGTAGGCAGTACAGCCAGATACACACCTGTGGAAGATGACGATGTTGTGTTTGTTGAGTCAGTACAGCCTGCAGTTTGTGGTCCAGCAGTATCTAATGAAAGAAACCTTATATTTACATCTTCAAAACATGAAAATCCACGAGGAAATTATTCCACAGTTCCCCCTTCCTCGAGAGATTTGACTTTTCACAAGGGAAATATATGTGAAACAATCATAATTGATGATGAAGGGGACACAGAAACAAATGGAGGGGAGGAGAGAAATCCTACCAACTTTATTGAATGGGGACCTCATGGAAATAAAAATAGTACCAAAACTGTGGATTTCCCCATTGCCAGTCTATCAAGAAGCAAG
Seq A exon
GTAAATTCAGGAAGGGTTACTAATAGTATCACCTTTAGAAGTGGGTATAAGCCCTAACTGCTGGGTGAGAGGAATTTAAGGATTGTACATCACTATAGTGTACCAACTTGGGAGATGTCACTAAAGGATTTAGTGTTAATATACAAACATATGCCTCATCTTTAACTTCACAG
Seq C2 exon
ACCAAGACTGCCGTAGGACCTTTTAATCCGGGTAGGATTGATATTACAGATGAATTTCACAATGGAAGATTTGCAGTTCATCCCAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220:ENSRNOT00000047731:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=NA C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCACAGTTCCCCCTTCCT
R:
TCCTACCCGGATTAAAAGGTCCT
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]