BtaINT0164813 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111253716-111254310:+
Coord C1 exon
chr3:111253716-111253988
Coord A exon
chr3:111253989-111254159
Coord C2 exon
chr3:111254160-111254310
Length
171 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TAATGACTGTTCTTCTGCAGGGG
3' ss Score
8.06
Exon sequences
Seq C1 exon
AATGTATTTAACAAGCCAAAAGGAGCAAACTCTTCGGCAGTGCCTGTATCTCAGACCCAAGTGATTGTAAGCCCACCCTCTGGGTCAGCAGTGTCAGCCGGAAGAGGTCACACCTCTGCCTTTTCCCCCCGCTCCGTCAGTGGCTCTGTTGCAGCCAGTCTCCAGCCTCCTGCTCAGTTCCAGCAAGTTGCTTTAACCCATAGGATTGTCAGACTCAGGTGTCAGCACTGTAACCATCTGTTTGCGACAAAACCAGAACTTCTTTTTTACAAG
Seq A exon
GTAAAGAGAGATCATAAAAGGGATTGAATATATGAGTTTATCCAATAGAAGCATTTTTGTCTTTTCATGTTTGACAGTCACTCACTCAGTTTTCTTTGAAGTGAGAAAGAAAAAGATTTCTTAAAAATAAAGCAACACTTTAATTAGATATTAATGACTGTTCTTCTGCAG
Seq C2 exon
GGGAGAATGTTTCTGTTTTGTGGCAAGCTTTGCTCTGATGAATACAAAAAGAAAAATAGAGTTATGGCAATGTGTGACTACTGTAAACTACAGAAAATTATAAAGGAGACTGTACGATTCTCAGGAGTTGATAAGCCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948:ENSBTAT00000029263:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(57.9=24.2)
A:
NA
C2:
PF064679=zf-FCS=PD(36.8=27.5),PF064679=zf-FCS=PU(91.9=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGTAAGCCCACCCTCTG
R:
AGCTTGCCACAAAACAGAAACA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]