HsaINT0186071 @ hg19
Intron Retention
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35476048-35476637:-
Coord C1 exon
chr1:35476359-35476637
Coord A exon
chr1:35476199-35476358
Coord C2 exon
chr1:35476048-35476198
Length
160 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GGACTGTTGTTTCTCTGCAGGGT
3' ss Score
9.9
Exon sequences
Seq C1 exon
AATGTATTTAGCAAGCCAAAAGGAACAAACTCTTCGGCGGTGCCCCTGTCTCAGGGCCAAGTGGTTGTAAGCCCGCCCTCCTCCAGGTCAGCAGTGTCAATAGGAGGAGGTAACACCTCTGCCGTTTCCCCCAGCTCCATCCGTGGCTCTGCTGCAGCCAGCCTCCAACCTCTTGCTGAACAATCCCAGCAAGTTGCTTTAACCCATACAGTTGTTAAACTCAAGTGTCAGCACTGTAACCATCTATTTGCCACAAAACCAGAACTTCTTTTTTACAAG
Seq A exon
GTAAAGAGAGATCATGAAAGGGATTGTATATAAACTCATCCAGTAGAAACACTTTTGTGTTTTCAATTTTGATCACTCAATTTGCTTTGACATGAAAAGGAGTTCTTAAAGATAAAGCAACTGTTTAGTTGGCTCTTAATGGACTGTTGTTTCTCTGCAG
Seq C2 exon
GGTAAAATGTTTCTGTTTTGTGGCAAGAATTGCTCTGATGAATACAAGAAGAAAAATAAAGTTGTGGCAATGTGTGACTACTGTAAACTGCAGAAAATTATAAAGGAGACTGTGCGATTCTCAGGGGTTGATAAGCCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-ZMYM6:NM_007167:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(60.0=25.8)
A:
NA
C2:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(91.9=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCAACCTCTTGCTGAAC
R:
CAACCCCTGAGAATCGCACAG
Band lengths:
249-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)