RnoINT0169202 @ rn6
Intron Retention
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145163622-145164657:+
Coord C1 exon
chr5:145163622-145163897
Coord A exon
chr5:145163898-145164506
Coord C2 exon
chr5:145164507-145164657
Length
609 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGTTTTCTTGTTTTTGCAGGGT
3' ss Score
11.66
Exon sequences
Seq C1 exon
AATGTATTTAACAAGCCAAAGGGAAGGAACTCTTCATTGGCACCCATATCTCAAGGCCAAGAAGTGCTGAGCGCACCCATGCAGTCTGCAGTGTCAGCACGAAAAGAAGCCCCCGCCCCTTCCTTCAGCAGCCCCATCAGCAACCCTGCTGCAGCCGCTCTGGAGACCCTTGCCAAGGAGTCCCACCAGATCGCTTTGACCCTTTCCTTCTTGAAACTCACGTGCCTGCAGTGCAGCCTTCTGTTTGCCACAAAGCCAGAGCTGCTTTTCTACAAG
Seq A exon
GTAAGGAGCTGGCCCGAGAGAGATGTGTGTAAACCATCCAGTAAGCATTTCTGGTTTTGCCAGTTTGCCAGTTCTTCAGTTTGTGTTGACTTAAAAATATGTTTATTTTGTGTGTATTTGTGTATTCACACATATGAGCATTCCATGGTGTGCTTGTGGGATACAGTTAGTAAGAGTTGGCTCTCCCCTTCCATCACATGGGTCCTGGGATGGAACTTGGGTTGTCAGGCTTGGCACAAGTGCCTTGACCTGATGAGCCATCTCACTGGTCTGGGAAAAGACCTGCTAAAGAGAAATCTGCTGTTTAGGTAGATATTTAAAAAGAGAGAGAGGTATATTTTTAACTTGGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGACCACAGTGCCTATGGAGGCCACAGGCATTGGATCCCCTTGTAGATGCAGTTCTAGGTAATTGTAGGCAGCCTACCGTGGGTACTGAGAATTGAACTCAGACCTCTCTATGAGCAGTACTCTCTTTTGACCAGTGAACCATGTTTCCAGCCCGTGTTCCCATGTTTGGTTAGAGTTTAACAACTGTTTTCTTGTTTTTGCAG
Seq C2 exon
GGTAGAATGTTTATGTTTTGTGGCAAGGCTTGCTGTGATGAATACAAAAGGCAAAATAAAGTTAAGGCCTTGTGCGACTACTGTAAGCTACAGAAGACCATAGAGGATACTGTGCGATTCTCAGGGGTTGACAAGCCTTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865:ENSRNOT00000019135:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(59.0=25.0)
A:
NA
C2:
PF064679=zf-FCS=PD(35.9=27.5),PF064679=zf-FCS=PU(91.9=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGCCAAGAAGTGCTGAG
R:
ACCCCTGAGAATCGCACAGTA
Band lengths:
354-963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]