BtaINT0164814 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111254160-111255328:+
Coord C1 exon
chr3:111254160-111254310
Coord A exon
chr3:111254311-111255155
Coord C2 exon
chr3:111255156-111255328
Length
845 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTATCCTTCTGGTTCTCAGTTT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGGAGAATGTTTCTGTTTTGTGGCAAGCTTTGCTCTGATGAATACAAAAAGAAAAATAGAGTTATGGCAATGTGTGACTACTGTAAACTACAGAAAATTATAAAGGAGACTGTACGATTCTCAGGAGTTGATAAGCCATTCTGTAGTGAAG
Seq A exon
GTAAGAAAAAAGCTCAGTTGTAGCCATAGAGCATGTGGTGGTTATGAAGTAATTTGTGATGAGTTGGGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACTAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAATCGCTCAGTCATGCCTGACTCTTAGCGACCCCATGGACTGGAGCCTACCAGACTCCTCCGTCCATGGGATTTTCCAGGCGAGAGTCCTGGAGTGGGGTGCCTTATTAATCCACAATTAATTTTCAAGAAATTTCTTTTTTGAGGTATAATTTGAAGCTTTTTTATTGAGTTTATACTTAACTCACTTCTAAGTCTATCCTTTTAAATGTTATAATAATCTCAATAAAGAAAACCTTTCCAAATATAATTAGAACAATGGTCTTAGTATGGAGTATAGAAAATCTCTTTGTAAGTTTAACTTCAGAGATCTTTTTTTGTACCCTTTCATAAACGGGGTACTTGGGCAATTACTGCTTCTCGGCTTAAGGAACTTTTATACCTCTTATGTTTCTGAATATAGATAACCTAATATTTACAGTGTATGTTTCAAAGGTGATACGAGTTTGTTTTGTGAATACAGATGGGACTATCTTTTAACTTAGAGCCAAATAATTGTGTCCAGATTTAGAAGTTAGCTTAAGGCTGGTATTATTGAAGACTGTAGAAATTCACTTCACTGCCTTCTGGTTAATGTAAACTTGATGTATCTTCCTTTTATCCTTCTGGTTCTCAG
Seq C2 exon
TTTGCAAATTCCTCTCTGCCCGTGACTTTGGAGAACGATGGGGAAGCTACTGTAAGATGTGCAGTTATTGTTCACAAACATCCCCTAATTTGGTAGAAAATCGACTGGAGGGCAAGTTGGAAGAGTTCTGTTGTGAAGATTGCATGACCAAATTTACTGTTCTGTTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948:ENSBTAT00000029263:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(36.8=27.5),PF064679=zf-FCS=PU(91.9=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(5.4=3.4),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(2.7=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAATGTTTCTGTTTTGTGGC
R:
AAACAGAACAGTAAATTTGGTCATGC
Band lengths:
318-1163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]