HsaINT0186058 @ hg19
Intron Retention
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35474353-35476198:-
Coord C1 exon
chr1:35476048-35476198
Coord A exon
chr1:35474526-35476047
Coord C2 exon
chr1:35474353-35474525
Length
1522 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTCATCCCTCTGATCCTCAGTTT
3' ss Score
6.47
Exon sequences
Seq C1 exon
GGTAAAATGTTTCTGTTTTGTGGCAAGAATTGCTCTGATGAATACAAGAAGAAAAATAAAGTTGTGGCAATGTGTGACTACTGTAAACTGCAGAAAATTATAAAGGAGACTGTGCGATTCTCAGGGGTTGATAAGCCATTCTGTAGTGAAG
Seq A exon
GTAAAGACAAAGTTGTTTTATTCACAGAGCATGGGTTGTTATAATTCATGACGACTTGGGCAATTAAGCCATGATTAGTTTTCACATTCTTTTTGTCTTACAAGGTGTAATTAGAAGTATTTTGGAGGCCGGGCATGGAGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGGTTGGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTGTTAAAAAACACCGTCTCTATACAAAATTAGCCGGGCATGGTGCCGCACGCCTGTAATCCCAGCTACTTGGGAGCCTGAGGCAGGAGAATTGCATGAACCTCAGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCATTGCACTGCAGCCTGGGCGACGAGCGAAACTCTTGTCTCCAAAAAAAAAAAGGTTTTTTTGAATTGTGTTTATAGTTAATTCACTTTAAAGTCAATCTTTTTATTTATTATTTTTGTTTGTTTATTTTTTTGAGACAAGGTCTTGCCCTGTCACTCAGGCTGGAGTGTGGTGGCATGATCTTGGCTTATTGCAGTCTCTGCCTCCCCGGTTTAAGGGATCCTCCCACTTCAGCCTCCCAAGTAGCTGAAGCTACAGGAGCGTGCCACCATGCCTGGCTAATTTTTTTTATTTTTGGTAGAGACGGGGGGTTTCACCATGTTTCCCAGGCTGGTCTTGAACTCCTGAGCTCAGGTGGTACTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCGACTGTGCCTGGCTGAAAGTCAGTCTTTTTAAATGTTGCAGTAATTGCAATAAAAAACTGTAAAAATGATTACATCAGTGGTATTAATAAAGAAAATCTCTTCATAAGTTTAGCTATGACATCAGAGATCTTTTTGTTCTTGCACTCATTTGCGAAGAGGAACTTAAAACAGTTGCTGCTTCTTGGCTTAAAAAACTTTTATACCTCTAATGTTTCTGAATATAAATGGCCTAATATTTAGAGTATATTTAAAAGGTGGTGGCAGGGCGCAGTGGCTCACGCCTGTATTCCCAGCACTTTGGGAGGCCAAGGCGAGCCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAATGCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCAGGTACCTGTAATCCCAGCTGCTCTACTCAGGAGGCTGAGGCAGGAGAATCGTTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCAAAACGAGTGAGACTCTGTCTCAAAAAATAAAATAAAATAAAAGGTGGTATGAGTTTGGTTTGTGAATATAGAGACTGTCCTGTAATCTAGAGGCAAATAATTGTGTATTAGAAATTAGCTTAAAGTTTCATATCTAAGACCACAGAAACTTATTATACCTCCTCAGTTAATGTAAATTTGATTTTTCTTCCTTTCATCCCTCTGATCCTCAG
Seq C2 exon
TTTGCAAATTCCTCTCTGCCCGTGACTTTGGAGAACGATGGGGAAACTACTGTAAGATGTGCAGCTACTGTTCACAGACATCCCCAAATTTGGTAGAAAATCGATTGGAGGGCAAGTTAGAAGAGTTTTGTTGTGAAGATTGTATGTCCAAATTTACAGTTCTGTTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-ZMYM6:NM_007167:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(91.9=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(5.4=3.4),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(2.7=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTGTTTTGTGGCAAGAA
R:
AACAGAACTGTAAATTTGGACATACA
Band lengths:
310-1832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)