RnoINT0169203 @ rn6
Intron Retention
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145164507-145165668:+
Coord C1 exon
chr5:145164507-145164657
Coord A exon
chr5:145164658-145165495
Coord C2 exon
chr5:145165496-145165668
Length
838 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GCATCTTTGCTGATGGATAGTTT
3' ss Score
2.28
Exon sequences
Seq C1 exon
GGTAGAATGTTTATGTTTTGTGGCAAGGCTTGCTGTGATGAATACAAAAGGCAAAATAAAGTTAAGGCCTTGTGCGACTACTGTAAGCTACAGAAGACCATAGAGGATACTGTGCGATTCTCAGGGGTTGACAAGCCTTTCTGTAGTGAAG
Seq A exon
GTAAAAAGAGTATTATACATAGGTAGTGGAGTTCATCAGTTTTTATTTTCAAAAACTTTGCTTAGGAAGCATTACTTGAGCATTTCTTTTCTTTTTTAAGACATGGTTTCTTTGTGTAACCTTGGCTGTCCTGGAACTTGTTCTATAGACTAGGCTAGCCTCTAACTCTTATTATAGAGATTTTCTACCTCCAAAATGTTAGGATTAAAGGCATGTGCCACCACCACCCAGCTGCTTGAACATTCTTAAACAGTTGAATTTATACAGTTTATACTCAGTACACTTGAGACCTGCCTTTTTAAGCATTTCAGCAATCTCAATAAAGAAAACCCATGGTTAATGGCATTCGTACAGAAAAGCTTGTAAATTCAGCTAGGATCCTTTCTACCTGTTTGTAAAGTAGATTCAATTAATTGCTGCTATTCGGTTTAAGAACCTTTGAAGCCTCTGATACTTCAGAGTATGGATGATTTCTTATTTAGAGCATACTTAAACATTAATTTGAGTTTGTTCTGTGAATATGGAGGTTATCCTATAATATAGAGGCAAATAATTACATCAGGAAACCAAGCCCAGGTCTTTTGAAAGAGCTTTTGACTGCTGGGCAATTTCTTCAGCCTCTTTTTCTTTTTCTTTTTTTTTTAAAGGCAGGCTCTCAAGTAGCTCAGCCTGACCTTGAACTTGGTATGTACCTGAGGCTGGTCTGGAACTTGTGTTCTTCCTGCCTCTGTCTTGGAGGTGCTGGGTTTGTAGGCCTGAAGTGTCATAGCTGACACCAGTCTTTCCTCCTTAAAGCTAACGAATGTTTGTCTCTCCTTGCATCTTTGCTGATGGATAG
Seq C2 exon
TTTGCAAGGTCCTCTCCGCTCGAGACTTTGGGGAAAGATGGGGAAACTACTGTAAGACGTGCAGTTACTGTTTACAGACGTCTGCAAATTTTGTGGAAAATCAACTGGAAGGCAAGCTCCAGGTTTTCTGCTGTGAAGATTGCATGTCTAAGTTTACAGCTTTGTTATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865:ENSRNOT00000019135:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(35.9=27.5),PF064679=zf-FCS=PU(91.9=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(5.4=3.4),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAATGTTTATGTTTTGTGGCA
R:
TAACAAAGCTGTAAACTTAGACATGC
Band lengths:
318-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]