BtaINT0164954 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040603 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr18:57900691-57902794:+
Coord C1 exon
chr18:57900691-57900775
Coord A exon
chr18:57900776-57902532
Coord C2 exon
chr18:57902533-57902794
Length
1757 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATT
5' ss Score
5.41
3' ss Seq
TGCGTTTACTGCCTTTCCAGGAT
3' ss Score
8.93
Exon sequences
Seq C1 exon
GATTCGAATCGGAAGTGGCCCAGAGCGGCCATTTCGCTTCTGTTGTCAACTCTTCTAACCTGTGAATCGCCTGTGGGATGCTGAG
Seq A exon
GTGATTTGGAACATTAGCAATGGGGAATCTGCGGGGTCGATGAGGGGGGTAATCCGCTTGGTGTGAGTGATGTTGGGAATTGGGGGCCGAGTGATGGGGGTCTGTGGAATGAGTGATGTCGAGTCTGCGGAGTGAGTGGTGGGGTTCTTAGTGATGGGAGCTATAGAGTAAGTGGGGTTTTCTAATTTAAGTTTACTGCTTGGCTCGTTGATTTTCACTCTTTCTTGCCTTATTTCTGTATGTATATAAGTATTTTTGTAACTTGAATTCCAAGTGTACTTTAATTCAGAGTTTATATGTTGGCCCATGAAATTTATTTATATGATAGTGAACATGGGTCTTTAAGAAGGCCTTGGTATGGTACTGGGAACCACTTGGGGAAGTGGTCCGCTGCTTGGGGGACTGTAGGAGGCAATGACTGACTGGGAGCAGGAGCTTTGAGGGTCACATTGTAACACACTCAAGGGAGACAGTGATTGAGGGAGGATCAGTGAAATCAGTAAAGTGTTTGGGGTGCTAAGGGCAGCATTTGGGAACCAGTTGATGGGAGACCTAGTGGGCCAGTGATGGAGGTTTGTGAAGCTGATTGATTTGCTTTCTGGGCAGTGAGTGTTGTCCTTTGGAAATGAATGAGTGGGTCAGTGTTGGTCTCAACTTGGGTCTCTGTGGACATGGTTAAGGATAAGTGACTGGGTGTTGAGCAAATCAATGATAGTTTCTTCTTGGGGTGCATTATTTGGAACCCTATATTGGGGGTTATCTAATGGTGATTGGGAGTCCTAGTACATGTCTGCAGGTTTTCCAAATGAAGCTGGGATTCCATACATTGAATTTGAATTTTGTCAGAAAAGGTTGAGCTGTCTGTATTATGGATGGGCACTGAAATGTCCAGAACCTTAGTTCCAGACATGGGCTACTTGAAGCCTAAGCTTTCTGAAGCCAACAGGAAATGTAAACAGTGTTTCTGGAAATTGACTATGTAGACCACATGGGATAGTGGCAACTGGGACGTGTCAGAATTCCCTTTGGAGACTGAGTGACCTTAAGGCAAATTAGGTAACAGCAGTCAGCTTCAGGTTTCCTCATCCACGAAATGGGTACGAAAGTGAAAGTGAAAGTTGCTCAGTTCGACTCTTTGCCACCCCATGAATTATACAGTCCATGGAATTCTCTAGGCCAGAATACTGGAATGAGTAGCCTTTCCCTTCTCCAGGGGATCTTCCAACCCAGGAATCGAACCGGGGTCTCCTGCATTGCAGGTGGATTCTTTACCAACTGAGCTATCAGGGAAGCCCTCAAATGGGTATAATGATGATATTTAGCTGACAGGGTGGTGTGAGAATTACTCAAGGTATCTGATACCTGACTCAGCAACTTGCTGATTTTTATTCAGCATGTAATAAAATAATTTTTATTTTATTTTTTATTGTTTATCATGTGCCTGGCAGGTTCTGAGGACTTGACAAACCTCAACTCATGGAAGTTTCTCATTGCCTATGATAAATACCTTCCTCTTCATTTTGGAAACTGCCACTAAAATAATCTCTCTCTCTTCTCATAGTTAAAAGGTGTGTCAGAGCTGCAGTTAAACCTTCATGAACTTTAATCCAAATCTTTTCCATCTTATTTTTTACCCCAATAGATTCCTGAGTTTTGTTTACCCTCATGTTGTGAACAGTGACTTTCACCTAATGGCCCTCAAAAATTCCTCTGGCATGGATATTAGATGAGTAATGATGCGTTTACTGCCTTTCCAG
Seq C2 exon
GATTTCTAGTGTCCCTCCAGAGCCCCTGGGTCAGGCCACATCACGGAGACTGCAGGATCTCCCTACACAGCTCAGGTCGACTCTTCCTAGCAGCTCTGATTGGAGCCTTCTGATGCCCACCCAGCTGCAGGCTCCTGGAAAGAGTGTTGTTGTCAGCAAGAGAGACCAAGAATTGAAGCCCAGAAGGGACATGCTTGCTGACATGAATTTGCCCCAGAGGCCCCAGGTCTTGGGTTTAGAGGAGCAGGATGTATCGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040603:ENSBTAT00000052898:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.156
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCGAATCGGAAGTGGCCC
R:
TCACACGATACATCCTGCTCCT
Band lengths:
346-2103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development