MmuINT0179670 @ mm10
Intron Retention
Gene
ENSMUSG00000056592 | Zfp658
Description
zinc finger protein 658 [Source:MGI Symbol;Acc:MGI:2652821]
Coordinates
chr7:43562256-43564843:+
Coord C1 exon
chr7:43562256-43562421
Coord A exon
chr7:43562422-43564613
Coord C2 exon
chr7:43564614-43564843
Length
2192 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCTTTCTGCTGTCTCTTTAGGTC
3' ss Score
11.74
Exon sequences
Seq C1 exon
GTGGTCTCGAGCGGTCATATCCGCTTAAATCTCCGCGCAGATCAGTTCTGTTATTGTTGCCCGCACTCCAGGAGAGTTTGGATTCTAACACTGAGGGCCCGGGGGCGGAAGTCGCAGGGAGGGACACTGCGCGTCCTGTGCAGAGTTCTCTGCATTGTTGTGAGAG
Seq A exon
GTGAGCGGCAGGGGCGCAGGGAGGATGCTGTGCTGTTGAGCGCTGATTTGTGTTGAGTGACAGCTGACACAGCTACTGGAGGGATGCCCTGGTTGAGCTGGGGTGGGAATCCTATGGGAGTTGGGAGAGCAGGGTTGCTGAGAGAGACAGACAGTGCAGCCAGCTACCGCAAGCCTGGGGCTAGCGTCTCTGAGGGCGATCGCGCTGCTTTCTAGTAGTAGCCTGCGAGAAGAGAACAGGCAGATACAAATGGAAAATGAGATTATTTGTGGTTTGGGCTTAATTTGGGAAAGCCAGCCATTCTCGGTCAGCCTGTGGCTTCTGCCTGCGGAACTAATACTAAGAACACGTGGAACAAAAGCCAGGGGATTTGCATATGCAAAGAGGGCACAGGCATCGGAGCTGCAAGTTGAGCCTTTGTGCAGGTAGCAAGGCTTGTAAAACAGGACCTTTTCGTTCCCAGCATGTAGTCTCCTGTAGAGAGCTAGCGCTGCAAAGCAAACGTTTAAAAGGCAAATCCTAATCCCCGGGCCGTTTTATGTGAGGGCTGGGACATGAGGCGGGTCAATGCTGCCTCTGCTGAGACCATATGGTCACAATAAGAGTCAGTGATTGGCACTTGAGCAGAAGGACCCTGTGTCCTTATTGGAGGTTGTATGTTCCTTGGGTATCACTATTGAGTTTATTGAAGATTCTCTGGAAACTAGTAAATTGTCATCTTGGCTGCCAAAGTAATAACGTTCTGGGGAACTAGGTATGCCCATTTTAACCCCGTGGTTAAATTAATCCTGTGGTCAGTCCACTTATCAGAGGTTACTTAAAGTCCAGAATGACAGTGAATATGTCCTGTGTACCATAAAAACATTGTGGACAAGGGAGAAATGTTTTGTGTCGAGGGCCTGGTGTTTATGTGCAGGGTTTCCAAGTCAGGGAAGGGATTGAGCCATTGAATTTAAGGAAGAGAAACAGGATGTCAATGTGGGCATAGATGAAAACGAAAATGTCTAGACAGGCACAGAGAGCCAGGAGTGGCCATCACCACACCACACTGCACCACATCTCTGCTCTCAGAAGGAGAAAGGGTTCTGGGTGCTGGGCACACAGAGACCGCCCGAGATCATGGGCACTGGGTGTGGTTTAGAGTAGGGAAGGAACGGGACTGGTCCTGCTCTTCCTCTTAGGGTGTGTTCTGGAACAGCCCATAAGCTTAGTTGTCATTTCTGAGAGAGAAATGGTTGTATCAATGCTGGTGGCATGCTTAAAAGAGCTCTCGTGAGAGCTGGGCACAATGGCGCACACCTTTAGTCCCAGCACTCAGGAAGCAGAGAGCCGCAGGCCAGCTACAGCAACACAGTGAGGCCATGTCTCAAAAAGTTGGGGACTGGGGAGGGCTGTGTCTGAACAGCTTAGCAAAGCTCAGAAAAAGGAGCAGCCTGAGCAGCTTGCTCGTTCTCATGTGTCTTTCTGTGTGGGTTCTGAGGGCAGGCTGAGCGTCATATCACTGCAGATCCCCAGTGCCCATGGTACACACCTGCGCCCTCACTGTGGCATCAGCGAGGTTAATTCCTTATCTCCTCACAAGTCAAAGGTACAGCAGCTGCAGTGAATCCTTCCTAACTATCGTGTTTGGCGTGTAATTCAGGGAAGGGGAGTTGTTTGGGGTTTTGGCATGTGTGTTGTATGTAGTCTATGCATGTGGGTGTGGGCATAGGTGCGAGTCTGTAAGTGCACCTGCACTGAGGCCAGAGTAAGCTACTGAGTGTCGTGTTCCATCACCCCAGCCTTATTCCCGTGAGGTTGGGTCTGTTGAGGTTGGGTCTGTCGCTGAACCTGGAGCTAGGCGGATAGCCAGTGAGCCCAGAGGTCCTCCTCTCTTTGTCCCACACAGCACTGGACTTACAGGCATTTGTAGCCAAGCCTGCCTTTTTCAGATAGCTAGGTATTTGAACTCAGGGCCTCTCGTTGGTGCAGCAAGCTCTCTTACCCACTGCGCCATCTTCCCAGACCCCAGATTATGGTGTTTGGGTTTTCTTTGTCATCACCCTGGTCAATACCAGACAGGGCTTTTCTGAGTATTATCTGTTCTAGCATGTCTACACTGGGCATGTCTTGGGCACTTAGAAACTCATGGGCAAATGTTGGCTGAGGATACAAGGTCATTCCCTCACTGGGGCTTTCTGCTGTCTCTTTAG
Seq C2 exon
GTCAAAGGCAGGCCACATCAGCCAGGCTGGGGGATTTTTCTACCTCACCACAGCTGGCCTCTCTGCTCAGCTGCTCTCCTGGGAACCTCTAGCCACTCAACCAGCTTCCAGTTCCTGAGAAAAATTGCATCTGCCAGCAAAGAGGCAAGAGAGGAAACATACCTGCTGACATGAAATTGTCCCAGAAGGCCCAGAGACTGCACCCACAGGAGCAGGAAGGGTCCCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056592:ENSMUST00000107972:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types