HsaINT0186302 @ hg19
Intron Retention
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:12964]
Coordinates
chr19:52074531-52076654:+
Coord C1 exon
chr19:52074531-52074728
Coord A exon
chr19:52074729-52076402
Coord C2 exon
chr19:52076403-52076654
Length
1674 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTACTCATTGCTTTTCCAAGGCT
3' ss Score
3.85
Exon sequences
Seq C1 exon
AGAGCGACCATTTAGCTTCTGTTGTTAAGTGGATCTAAGCCTATGTCGCTTACTGGACGCTGAAGTGATTGGGAATATTAGCAGTGGGGGTTCTGTAGGGTCAGGAAGGGGCGGCTGGCTTTGGGGGAGTGATGAGGGGCTTGTTGGGGGTGGGGGTGCGTGATAAAGGGATTTCTCGGCTGAAGACGAGGCTGTGAG
Seq A exon
GTGAGTGACGGGCTTGTTTTGGCTGAGCGATGAGGGGTTTCTGGGGTGGGTGATGGGTGCTGTGGGGTAAGTGGCGTTTGCTAATTTTAGTTGGATAATTAGCCTGTTAATTTTCCCTCTTTTCTTGCTTATTTTCTGCTTGTAGTATTTTTGTGACTTAAATTCCAAGTGTACTTTAATATCGGATTTTATATTGGTCCACGAAACTTGCTAACTTGAGGACAGTGAACGTGCATCTTAAGAGCGCCTTTGCGGATGGTGCTGGAGGACGTTCAGGGAAGGGATTCACTGTCCGTGGGACTAGGGGAGTCAGTGATTGATTGGCAGCCAAGAGCTTCAGAGGTTGGAGGACTTTGAGGATCACACTGTAACACTCTCAGGGGACCAGTGATGGGCAACCTATAGGAATCAGTAGAGTGGGGTTGCCAGGGGTAGCCTATGGCAGCCAGTTGACTGGAGGCGTAGGGGGTCAATGATGGGGATTTGTGAGGGTGAATGCATTGCTTTCTAGGCAGTGAGTGTTGGGGTCCTTCAGGGATTGGTGGGTGGGTCAGTGTTGGCCTCTTCTTGGGTCCCTTGGACATGGTAAGGATCAGTAATTGACAGTTGAGCACATCGATGATGGTTTCCTATTGGGGCATTTCATTTGGACCCCTATGTTGGGGATTATTTGTCGTTTTATGGAAACCAGAAAATTGTGCTCGCTGGGAAACATTTCTTGGCTATCAGGGCAGTAAAGATTTCAGAAGCCTGTGCCATGTCAGTGACTGGGAGGCATTTTGGAACTTTCTGGCAGCCCTGTAGTACACTCATTGGGGATTTCTGAAAGTCAGTCCTGTCAGTGATTGCATTCAGGTGCGGTGGGGGCAACTTATTGTGGACAGGCAAGAAATGGTAACTGGAGGCCCTGATGCATGTCTGCAAATTTTCTGTGTCAAGATGGGGATTGGGACAGTGATTTTAAGTTTTAGCTCTAGTCAGAAGAGGCTGGTCTGTGTGTGGTGTATTATGGACGGGGACTGAAAAGTCCAGAAGCTCAGAATAGGTACACCAGACAGAGCCACCTCCCGGCCTGAGTTCTATGAAGGCAACAGAAAGAGGAAATGGTGTTTCTGGAAGCTGGCCACGTATGGGTACATGAGATAGTGGAGACAGTGTACAGTTTAGAACAAGGCAGATGTGGGGCTGATTCCCTGTTTTTCCATTTACAGACTGAGTAACCTTCAGGCAAATTATGTAACAGCACACAGCCTCATTATCCTCATCCTCAAAATGGGTATGATAATGCCCATGATATTTAGCTGACAATTAAATTGACAACTTTCTTTTTTTAATTCATATTTATCACGTGCCAGGCAGGCACTGAGGACTTGACAAGCTTCATCTTGGTTAAGTTTCCCAACATCTGTGATAAATACCTGCATTTTCATTTTGGAAACTACAACTAAAGTAATATTTTCATATTCTCACAGTGAAAATGTGGCAAAGCTGCAATGAATTCACCATTTAGTCCAGACTCAGTCTTTATTTTTAACCCTGACTAATAACTAGAGTTGGGCTTTCTGAACTTTGTCTACTCCAATGTCTGACACAGTGACTTCACCTCAGTGCCCTCAGGAAATATTTGTGGAGTGAATGTTGAATGAGTGACCATGTACTCATTGCTTTTCCAAG
Seq C2 exon
GCTTCTGCAGAACCCCCAGGTCAGGCCACATCATTGAGGCTGCAGGATCTCTCTTCATAGCCCAGTACGACTCTCCGCCGTGTCCCTGGTTGGAAAATCCAAACACCTATCCAGCTTCTGGCTCCTGGGAAAAGTGGAGTTGTCAGCAAGAGAGACCGAGAGTAGAAGCCCAGAGTGGAGATGCCTGCTGATGTGAATTTATCCCAGAAGCCTCAGGTCCTGGGTCCAGAGAAGCAGGATGGATCTTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497-ZNF175:NM_007147:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.708
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGTCGCTTACTGGACGC
R:
ATCAGCAGGCATCTCCACTCT
Band lengths:
351-2025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)