BtaINT0165207 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020448 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
Coordinates
chr4:113095619-113096638:+
Coord C1 exon
chr4:113095619-113095738
Coord A exon
chr4:113095739-113096403
Coord C2 exon
chr4:113096404-113096638
Length
665 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GGGGAATCTTAAATTCTAAGAAA
3' ss Score
-0.96
Exon sequences
Seq C1 exon
ACTCGGAGGGACCCGTGTCCAAGCCGGAAGCCCCATCTCAGGCTGAGCCCCGGGAAGAGCCCTGCGTGTGGGAGCAGCGTGACCCAGAAGAGAGAGAGATCCTCATGGATCCAGACACAG
Seq A exon
GTGATGGCAGCTGCAGACAGCCCCAGGTCGGGGTGGGGCGGGAGAGAAGCCCCCATCCCAGCATGAGTTCTGGGGGGCGGTGGGGCGCAGCTTCTCTTAGTTGCTCGTGGGGCCGGTTCTGCCGCCTTGCAGATTTGGCAGTCACGTACAGGAAGTTTCAGGGCCAGAAAGGCCGCCATGGAGGTCTGTCTTTTGGGTTAGAGGCATGTCACTTGAGATGCCCAGGTGAACTGGAGACGATGGGGAGGGGCGGCCTCCCAGGCCTGACTGGGGCTCTAGACGTGGGAGCGGCCTGCCCAGGCAAGTGGGCAGAGAAGGCTCTGTGTGGGTGTGTGGTGTGCGTGGGTGCATAGTGTGCGTGGCTGTGTAGTGTGCATGGCTATGTGGGGTGTGTGGTGTGCGTAGCTGCGTAGTGTGTGTGGCTGCGTGGTGTGCGTAGTGTGCGTGGGTGCGTAGGGTGTGTGGTGTGCGTGATATGCATACGGTGCGTAGTATGCGTGCTGTGCGTAGGGTGCGTGCTGTGTGTGGTGTGAGTGGTGCGTGTTGGTGCACGTGGCCGGTTGCTTTGTGCCCGGCTGTCATCCCCAGCATTCTCAGCCTGTTCTCACAGGCAGCTTTACCCTCCAAGGCTGTCCCCTCACCCGAGGGGAATCTTAAATTCTAAG
Seq C2 exon
AAACCAGTTCCCTGAGAACATCACACCAAGTGACAGGAAGTATGCGGGTTCTCGGGGACTTGGCTCTCCTGACGGTGTCGGACCAGGTGAAATCTGGTCCTCCGACCGTATTCTCTGCCTCGTCACAGCAGCCTTCCTGTCGGGGCCCTCTGCTCCTCCTGTTTTACACGTGGAGGGCGTATTTACCAAAACCTCCCCAGAAACTTGCTCGAAGGCAGCCCCCTCCCTCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020448:ENSBTAT00000027249:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=0.443
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAGGGACCCGTGTC
R:
GAGGGGGCTGCCTTCGAG
Band lengths:
344-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]