HsaINT0186755 @ hg19
Intron Retention
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:13076]
Coordinates
chr7:148904443-148907796:+
Coord C1 exon
chr7:148904443-148904562
Coord A exon
chr7:148904563-148907676
Coord C2 exon
chr7:148907677-148907796
Length
3114 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
ATGTCATTCTCTGTCCCCAGGAG
3' ss Score
11.5
Exon sequences
Seq C1 exon
ACGCGGAGGGCTCAGTCCCCAAGCCAGATGCTCCAGTCCAGGCTGAGCCCAGGGAAGAACCTTGTGTGTGGGAGCAGCGCCACCCCGAAGAGAGAGAAATCCCAATGGATCCCGAAGCAG
Seq A exon
GTGATGGCAGCAGAAGAGAGTGCGGGGTCCAGGGAAGGGCGAGAGAGGACAGCCGGCTTTCCGCACACTGCTGCCGCGAGGCGCCACTGTGTGTGCACCATGGGGCGAGGGTCTTGGGTGGCTCCCAGGGGCCAGTTCTGCCAGAGTCGAAATTTGGTGGTCACTTATAGGAAGAGATCTCAGGGCTCAAAATAGCACCCTGGATATTTGTGGTGTGGTTTGTTAAAGCCGCGTAGCTCTGGACTCTCAAGTAAGCTGGGTGGAGAGACGAGGAAGGGCTTAGGCTTACGCTACCGCCCCAGGCCCGGGCTCAGAGAGGCTGACAGAGGAGGGAAAAAGGAGTCTGCGGCGCATGTGGGGTTTCGCCCCGGCCCGTCGCTTATTGCTTGGCCTAATGTACAGCGTCATCACCTCATTCGTCGGCCGACACATGCGGCTCACCTGCAGGCTCGCCCTGCAAGCCGCTTGCCTCACTCAAGAAGGAATCTTAAGCCTGAGGAAATCGGGCCCCCCGAGCACATCACACTTGATGAGCTCTTGCTGGGGTGGAAAGGGTGGAAGGCCCTAGGGTTCTAGGCCTGCCTCTGCCTTGGAAATCTTTCCTCAGGGTCAGCTTTCCTGAGCATTGTTGGATTAGGTGAAATCTGGTGCTCAAACTGTGTTCTCTACCTCATTGGAGGAACTTTTGCCTGTCTGGGCCCTCTGTCCTCCCTTGTTTTTTTGTTTTTTGTTTCTTTGAGACAGAGTCTCATTCTGTGGTTCAGGCTGGAATGCAGCGGTGCAATCTCAGCTCACTGCAACCTCCGTCTCCCAGATTCAAGTCTGCAACCTCAGCCTCACTGCAACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATACACCACTGCGCCCAGCTAATTTTTGTATTTTTAGTAGGGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCATGCCCGGCCGTGTCCTCCGTTGTTTTTAAGTGGAGAACATTTTCCTGAAACTCATCTTAGAATGCAGCTCTCAAGGCCACACTCTCTCCTCCTCCCATTCCCAGTCTTTCCTTTTTTTGAGATGTGATTTACAGACCATAACATTTACTGTTTTAAAGAATGCAATTCAGTGGCTCACAAAGTCATGCAACCAAAATCATTATCTAATTCCAGAACATTTCTACCATAAGAAACCCCACACCCGGCAGGGCACGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGTGGGCGGATTAGCTGAGGTCAGGAGTTCAAGACCATCCTGGCCAACAAGGAGAAACCCCGTCCCTACTAAAAAATACAAAAAATTAGCCGGGTGCAGTGGCGTGCACCTGTAATTCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTGGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGTCACCGCACTCCAGCCTGGGCTACAGAGGGAGACTTCATCTCAAAAAAAAAAAAAGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAAAGGCCGAGGAGGGCGAATCATGAGGTCAGGAGATCGAGAGCATCCTGGCTAACACGGTGAAACCGTGTCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGAGACAGATTCCGTCTCAAAAAAAAAAAAGAAACCCCACACCCACAAGCAGTCCTTCCCTGCTCTCTTTTACCACCCCCCGCCCCTGGGAACCACTAATCGACTGTCCATATCTATGAATTTGCCTGTCCTGGGCATTTCCTCTAAATGGCTCCTTCCCTGTCTTCATCAAGGACTGCAGAAGTTTAAGGTCAGCAGCGGTAGTAACAGCACCTAGTCTTATGGGGTAGATTTTTACATTTGAAGCACTGTAATCTCAACAGTTTCAGTTGGTTATCAAACCATCACTGAGCATGAGATAGAACAGGGATCACTGTGTCCTTTTTGTAGATGAAAAGGGTAGACCGGAACCCAGAGAGGCTAAATGACTCATCCACTGAGTTGGTGCGGAGTTGAAGGCAGGATCCCAGTCTTCAGATTCTTTGTCTTCTCTCTTTCCTGGTGCCTGAGCCTCCTCTTGCAGCAGGGGGCGCCATCAGAAGAAAAGGCCCTGTTTGTTGCATGCTGGGCTTCTGTGTAGAGGCTATGTCCTTGTCTTTTATGCACAGTGAGTCCTCACTTAATGTCATTGATAGGGTCTCGGAAACTGTGGCTTTAAAGTGACATATAACACAACCAATTTTTCTTTCTCATCAATGTTATAACTAAACATCATAGAAGGAAATGATGTTATTTGAGGATCTGCTATGTGTCATTTCACTTGAACTCACTGTTTCCAAGAACCTGCTGACGACAGTGAGACTGGCTGTATAAGGAGGTTCTGCACTATCTGTCCAACAATAGAGCTTAGTTGTGCCTTTTTGCCCATCCCCGCTTCTCACAAATCATATATATACACGTGTGTGTGCATCTGGCCTCAACCTGGCCAGCTCTTTCTGACTGGGGTGACTAACAAGGACTAATGACTCCCACAGAGAGGTCCAACTTGTGGCCCAGTCCTGATTAGGACCCAGCCAGTTACACAGCTCTAGGTTGTTTCTGAATTCTCTCTTCAGTGTCATCACCCCTCATTTTGCTGCTTGCCTAGCCCTTTTTCTTGAATGTTGGCTTCCTCTCTGCTCCTGAGACCTTCTGCTCCTCAGGGTCCCCCATGGTTCCAATAGGAACCCGAGACCCCTGTCTTCTCCCCTGGCAAGTGCTGTCAGCCATGCTTCTGAGCCCAGAATGTCCTGGTGACCAGCATGCAGAAAAAAAGACACAAAGCAATGTCATTCTCTGTTCCCAGGAGCAGAGCTCCTGGTGCCTGCAGAAAAAAAGACACAAAGCAATGTCATTCTCTGTCCCCAG
Seq C2 exon
GAGCAGAGCCCCTGGTGCCTGCGCAGGATGCGTCCTCCCAGGTGAAGCGTGAGGACACCCTGTGTGTCCGGGGTCAGCGGGGCCTGGAGGAAAGAGCCATCCCTACGGAATCCATTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265-ZNF282:NM_003575:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.951
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)