MmuINT0178923 @ mm9
Intron Retention
Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47840603-47842973:+
Coord C1 exon
chr6:47840603-47840722
Coord A exon
chr6:47840723-47842853
Coord C2 exon
chr6:47842854-47842973
Length
2131 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GTGTGGTTCTCTCTCCCCAGGAA
3' ss Score
11.99
Exon sequences
Seq C1 exon
ACACAGATGGCCCAGTGTCCAAGCCAGACCCTCCGGTCCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCCGAAGAGAGAGAAATCCCAGTGACTGCAGACACAG
Seq A exon
GTAATAGCTGTTGTGCTAAGGATGGTTCAGGGAGGGGCAGGAGAGGAGAGCTGGGCACCCTGCATACACACAAGGAGTTGCTACTATGTAGGTCTGGAGAAAATAGGTCTTAATGCACCCAGGAACCACTTATACCACAGCTGTTGTGTGGTCACTTACAGAACATGCCTTTAGGGCCTAAAACCATATCATAGGCATTGGCCTTTCGTAGCTCTGAATTTACAGGTGAGCCAAGGAAGAGACTGGCTGTGGTGCACACCTTTAATCCTAGCACTCAAGAGGCATATGGACAAATGGATTTCCATGAATATGAGGCCAACCTGGTCTATGTAGAGAATTCCAGGCCAGCCAGGGTGACACAGTGAGACCCTATCTCAAAAAATAAAGAAGGAAGGAAGGACTTAGGCCAGGACGCCTCCCAGACTTGGTGGGGTACGTGAACAACTAGTGGCCCCACACTCAGTCTCAGGGAGACTAACAGAGGAGGTGGAAAGGAAGGCTGCAGCAGATGTAGTTGTGCCTGGCCAGTTGCTCACTGCCTGCGTGTGATCTGCATCTCATGCTGCACCTCATACCCTATTCTAGCGTTGGCACATACACATACACTTCCCTACTCACTCCTCACTCATAAAGGAACCGTTAGTCCTAAGAATATCACATTTGGCAGCCGTTGCTAAGATGGAAGACACTAGTCTGACCTGGTGCCTCTGCTTCTTGAACAGTGTTGGGTAACATGTGGTGTGATGTTGTACTGGTGTCCTCTGCTTGGCTGACTTATCAAGTATCACCCATATTTATTTATTTTATGTATATGAGTACACTGTTGCTGTCTACACCAGAAGAGGGCATAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACACAGGACCTCTGGAAGGTCAGACAGTGCTCTTAGCCACTGAGGCATCTCTCCAGTGCTTGAATGGATTATATTTTCATGGAAACTTTCAGCACTGTTCTTTCTCCTTCTTTAGTTTTACTCTAGCTAATTGGTCATAAAATTCCCGCTTTAAATTACTAGCTTAGTGGTCCACAAAGTCACACAGACATTATTACTAGAACATGTGTATCACGAGAATCTCCCATACTCATTAGCAGCCACTCCCCACATCCCTTACAGGTAGCTCCAGCCAGGTAGACCTGCCACTGCCCCTGTGCACTTCCCAAGATGAATGTTTCATTTCAGTGGCCTCTCCCACTCCTCATCAAGCACTGTGGGTGTTCTTTGGCAGCTGTGGTTACAGATTCCAATATTGTGCGGCAGCTTTTTACATTTTGGGCCTTGTGTCCACAAGAGTTTGCCTGAGTTATCAAACCATCACGGGTCACAAAACAGAACCAGGACCACTCTACCTGCTTTAGATGAAACCCAGAGAGGTAAGGTTGCTAGTGGAGAGAGCTGGTGGTGGAATTGAAACCGGAATCACCCTCTTTGGGTCCTTACCCAGTCTCCTGTTGCCTGAGCAGTCTTCCACCAAGAGCTATTTCATTGTCCCAAAAAGCTCCAGAAGAAAATGCCCTGTTGGTCACAAAGCAGAATTCTGTGAAAAAAATATATGTTGCTGACTTTTATGCTTAAGGATACTATTTTCTTCACACATCAAGATTTGGTTGAGTCTTTGCCCAGCCTGATTGCTTCATAGAGCAGTATGTTTGTGTCTGGCCACTGAGGTAAAAAACAAGGGTGAGTGACTGCTGCTTCCAAAGCTTCCCTTTGGCTTCTCAGACTTCATATTGCTGTTGGCCTCATCTTTCTTTTTCAAGGTGAGGTCTCACTCTGAGCCCAACCTAGCTTAGAACTCACTATCCAGGTCAAATTGACTTCCAATGTGTGATGATCCTCCTGCCTCAGCCTCTTGACTGCTGGGATTGCAGGCATGAACCATCATATCCTTTTTGTTATCCCTTTTTCTTAATATTGGTCACTTCTCTGCTACTGGGACTTCCTGCTCCACAGGGTCCCACATGGCTCCAGTAGGAACCCAAAATTTTGGTATTGTCCCCTGGAAATGCTGACAGCCATGGTTCTGACCTCAAAACATCCTAGTGACCACTGTACTGAAAAAAAAAAAATTCTAGGAAGTGTGGTTCTCTCTCCCCAG
Seq C2 exon
GAACAGAGACTCTGGTGCCGGCACAGGACATATCCTCCCAGGTAAAGCGAGAAGAAGCCCTGTGTGTTCGGGGCCAGAGGGGCCTGGAAGACAGAGCCATCCCCACAGAATCCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821-Zfp282:NM_146175:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.732
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: