RnoINT0167995 @ rn6
Intron Retention
Gene
ENSRNOG00000026981 | Zfp282
Description
zinc finger protein 282 [Source:RGD Symbol;Acc:1306278]
Coordinates
chr4:77566643-77567769:+
Coord C1 exon
chr4:77566643-77566762
Coord A exon
chr4:77566763-77567649
Coord C2 exon
chr4:77567650-77567769
Length
887 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GTGTGGTTCTCTCTCCCCAGGAA
3' ss Score
11.99
Exon sequences
Seq C1 exon
ACACGGATGGCCCAGTGTCCAAGCCAGATGCTCCAGTGCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCTGAAGAGAGAGAGATCCCAGGGACTGCAGACACAG
Seq A exon
GTAATAGCTGGTGAGCTAGGCATGGGTCAGAGAGGGGCAGGAGAGGAGGGATGAGCACCCTACACACACACAAGGAGTCGTTACCGTGTAGGTCTGGAGAGAATAGGTCTTAATGCACCCAAGAACCACTTATGCCACAGCTGCTGTGTGGTCACTTACAGGACATGCCCTCAGGGCCTAAAATCATACCATAGGCATTGGCTTTTGGTAGCTCTGAATTTACAGGGGAGCTAGGGAAGAGGCTGGCGGTGGTACACATCTTTAATCCAGTGTTCAAGAGGAATATGAGACAAATGTATTTCCATGAGTATGTGGCCAGCCTGGTCTATATAGAGAATTCCAGGCCAGCCAGGGTGACACAGTGAAAGCCTATCTCAAAAAATAAAGAAGTAAGGAAGGGCTTAGGCTGGGACACGTCCCAGATTCCATGGGGTACATGAGGCCTTAGGCTTGGGAACAGCTAATGGCCCCAGTCCCAGTCTCAGGGAGACTAACAGAGAAGGTGTGGCTTCTCAGACTTCATATTGCTGTTGGCCTAGTCTCTTTTTCCAGATCAGGTCTCACTCTGAGCCCAACCTGGCTCAGAACTCACTATGCAGGTCAAACTGACCTCCAACTCATGACAATCCTCCTGTCTCAGCTCTTGACTGCTGAGACTGCAGGCACGAACCAATCGTATCCTTTTTGTTATCCCTTTTTCTTGAATATTGGTCACTTCTCTGCTACTGGGACTTTCTGCTTCACAGGGTGACACATGGCTCCAGTAGGAACCTAAGATTCTTGTACTATCCCCTGGAAGTGCTGGCAACCACGGTTCTGTCCTCAAAACATCCTGGTGACCAACACACTGAAAAAACATTCTAGGAAGTGTGGTTCTCTCTCCCCAG
Seq C2 exon
GAACAGAGCCTCTGGTGCCTGCACAGGACATGTCCTCCCAGGTGAAGCGAGAAGAAGCCATGTGTGTTCGGAGCCAGCGGAGCCTGGAAGAAAGAGCCATCCCCACAGAATCCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026981:ENSRNOT00000037248:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.976
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGATGGCCCAGTGT
R:
GTGATGGATTCTGTGGGGATGG
Band lengths:
238-1125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]