BtaINT0165303 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005882 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr7:12166356-12167226:-
Coord C1 exon
chr7:12167131-12167226
Coord A exon
chr7:12166433-12167130
Coord C2 exon
chr7:12166356-12166432
Length
698 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
TCCCCCTTAATTCATTCCAGGTC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTGATCAACTCTGTAAAACCAGGATGTCTTCCCATTTGGAGCAAAGAGAAGAGCTGTGCGTCACCGAGAGAGGGATCTTCCCAGGAGCCCACTTAG
Seq A exon
GTGAGCACCAGGCAGGCGAGGGGAGCACCTGCTCTGGTCGCTAAGATGAGTGTGTTAGATTTAGAAACACTTTCAGAATCCTTGATGGGGAAGGCTGTTGGGTTGAGCTTCCTCAGTAAATTTCACTTTCTTTCCTCTTTCCCTTGCCTTTTTACCTCTAATACTTTACTCTGGTTTCATAGAACATAGTAAATTATCCTACCTCCTATTTACATTTAGCACTTTCATGTGTATATTTCATCCAGTTCCTCCCCACTCTGTTTTTAACTAAGACTTTCTCTCAACATCAGGCTCAGTCTTCATGGAATCTTTTCTTAGAAAATTATCTACGATTTCCACTCCTTGTTCCTGTGATTACTTCTTAACTCTTCACATAGCCAAACACCTTAAAAATTGTTTTTGCTCCTTAATATTTTCCTTTTTTTAAAAAAAAATATTTTTATTTTTTGGCTACATCATGTGGCATGTGAGATCTTAGTTCCCCAACCAGAGATCAAACCTGGACCCCTTGCATTGGAAGTGTGGTGTCTTAACCACTGGACCAGGGAAGTCCTGATATGTTCCTCTTATTCAGTTTCTTCACATATTTAGGATTAATATTTTAAAAAAATGTGCATGTATCTAGCTTACTGGTCCTTTTTATCCCAGAGTTTCCTTCCCTGTGCACTTGATATTTCCTCCCCCTTAATTCATTCCAG
Seq C2 exon
GTCCTCACTTTCAACACCAAGACTCAATTCCTAATCAAGATATTTTGGCGGCAATTCCATCCATTGGCATGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005882:ENSBTAT00000007733:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]