HsaINT0186901 @ hg19
Intron Retention
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:15624]
Coordinates
chr19:14827806-14828545:+
Coord C1 exon
chr19:14827806-14827901
Coord A exon
chr19:14827902-14828468
Coord C2 exon
chr19:14828469-14828545
Length
567 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTCCCTAATTCATTTCAGAAC
3' ss Score
8.28
Exon sequences
Seq C1 exon
CTGATCAACTGTGCAAACCCAATGCGTTGTCTTATTTGGAAGAAAGAGGAGAGCAGTGGACCACTGACAGGGGCGTCCTCTCAGACACCTGTGCAG
Seq A exon
GTGAGCCCAGGCAGATCAGGTGAGCATCAGCTCTGGTCAGTAAGGGGAGTGTCCAGTTTGGAAACTGTCTTATCAGGGCAACCTATTCATACCTTTGACTGAGAAGCCTGTTTGGTTGAGCTCCCTTATTAAATGCCACCTTCTTTCCTTTTTCCCTTTCCTTTTTAATCTCTAAAACTTTGCATTCATCTCCTAGAAAGATCTGTCCTACTTTCTCTTCATATTTAATATTTCCATGTGTATATTTTATCCATTTCCTCCCCACTGTACATTCTTGCTAATATTTTTCCTCAACATTAGTCACAATCTTTGTAGAATCCTTTTTTGGTAAATTACCTACTATTTCCTTCCCATGTTCCTCTGATTACATAACTTCTCATCTAGCCACACACCTTAAAATTTTCCTTAACTTTTAGATGCATTCCTTCTCATTGCAATTTCTTCCCGTACATAGGACCAGTATTTGGGAAAAAAAGTCCACATGTGCCTTGCCTACTTTTGAGGTGACCTTGATCCCACAGTTTCTTTCTCTGTGTGCTTAACTTTTTCTTCCCTAATTCATTTCAG
Seq C2 exon
AACCTCAGTGTCAACCCCAAGAGGCAATTCCTAGCCAAGATACTTTTACAGAGATCCTGTCCATTGATGTGAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961-ZNF333:NM_032433:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)