HsaINT0186901 @ hg38
Intron Retention
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr19:14716994-14717733:+
Coord C1 exon
chr19:14716994-14717089
Coord A exon
chr19:14717090-14717656
Coord C2 exon
chr19:14717657-14717733
Length
567 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTCCCTAATTCATTTCAGAAC
3' ss Score
8.28
Exon sequences
Seq C1 exon
CTGATCAACTGTGCAAACCCAATGCGTTGTCTTATTTGGAAGAAAGAGGAGAGCAGTGGACCACTGACAGGGGCGTCCTCTCAGACACCTGTGCAG
Seq A exon
GTGAGCCCAGGCAGATCAGGTGAGCATCAGCTCTGGTCAGTAAGGGGAGTGTCCAGTTTGGAAACTGTCTTATCAGGGCAACCTATTCATACCTTTGACTGAGAAGCCTGTTTGGTTGAGCTCCCTTATTAAATGCCACCTTCTTTCCTTTTTCCCTTTCCTTTTTAATCTCTAAAACTTTGCATTCATCTCCTAGAAAGATCTGTCCTACTTTCTCTTCATATTTAATATTTCCATGTGTATATTTTATCCATTTCCTCCCCACTGTACATTCTTGCTAATATTTTTCCTCAACATTAGTCACAATCTTTGTAGAATCCTTTTTTGGTAAATTACCTACTATTTCCTTCCCATGTTCCTCTGATTACATAACTTCTCATCTAGCCACACACCTTAAAATTTTCCTTAACTTTTAGATGCATTCCTTCTCATTGCAATTTCTTCCCGTACATAGGACCAGTATTTGGGAAAAAAAGTCCACATGTGCCTTGCCTACTTTTGAGGTGACCTTGATCCCACAGTTTCTTTCTCTGTGTGCTTAACTTTTTCTTCCCTAATTCATTTCAG
Seq C2 exon
AACCTCAGTGTCAACCCCAAGAGGCAATTCCTAGCCAAGATACTTTTACAGAGATCCTGTCCATTGATGTGAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961:ENST00000292530:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.372
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains