BtaINT0165345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47838772-47840740:-
Coord C1 exon
chr18:47840662-47840740
Coord A exon
chr18:47838864-47840661
Coord C2 exon
chr18:47838772-47838863
Length
1798 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
GCTTCATATTCTTCCTCCAGTTT
3' ss Score
7.71
Exon sequences
Seq C1 exon
ATTAAAAATTTATTGATTAAAAAATTGAGACTCCTGGGAAGAACAAAATAAAGATCACGTGGGATACCATCCAGCAGAG
Seq A exon
GTAACACAATACAATCTTATTCCAAGTCCATTTTGACTTTTTTGGTCTCATTATAATCATTTTCCATGTATCATTTCATTCTTTTTACACCATACCACAAGTGTCCATTTCTCCAGTCTTAGTGATAAGTATCGGAGAAGGCCCTGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAACCTGGTGGGCTACAGTCCATGGTGTCACTAGAAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGATATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGAAATGGCGGAGCCTAGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCAGACACGACTGAAGTGACTTAGCAGCAGCAGCAGTGATAAGTATTAGCAGTTTTTAAAATCTGCTAATCCAGTTCCTTTAAATGCAACTCCTTAGTTACTATTGAATTTTAACTAGTGGGTTATTTCATTATCCATACTCAGGTTTTACAAATTCACTTTTCCCCAGCCTGGGTACCAAGAGAATAGGATCGGTAAATGAGATCATGTAGACAGTATTGATGATTCCTAATAGGAAGGTGGTGAACAGTGAGCTCTGAGGATTCTGGGAAAGATAGTTCAGCCTTGAGGAAGAGATCCCAGTGTGCAAGTACAGTTTTGCCGTTATAAAGACTGCCAGGCATGGTCTGTGCAAGTGGTTCTCAAATTGTGGCATTTGGACCAGCAGCATCAGTATCAACGTGGAAATGTTTTCAAAATGCAATTTCTCAAGCCCAACCCTAGCTCCAGTAAATGCCAAACTTGAGGATCGAGGCCCTGCAAACTGTATTTTAATAAGCCTTTCAGATGATTCTGAGGCATACAAAGTTTGATTACTAAACCCGCCCATTATGATCACCTGGGGAAAGTTTAAAAATTTTGATTCCTGAGTCACAGCTCTCTTCTGCTAATTGAATCAGAATGTTTGGGGCATGGGAGTCAGGCATCAGTATATTTTAAAGGTCTGCTAATGGACTTCCATGGTGATCCAGTGGCTAAGACTGTGTTCCCAATATAGGGGGCCTGGGTTCAATCCCTGATCAGGGAACTATAATAGAAGATCCCACATGCTGCAACTAAGAGTTTGCATACTGTAACTAAAGAATCCTGCATGCTTGCAATGAAGATCAAAGATCCCAGGTGCTACAGCTAAGACCTGGTGCAGTCAAATAAATAAAATGTTAAAAAAAGAAAAAATACACACAGTTCTCTTAAAAAAAAAAAAAAAAGATTTGCTGGATTCCAATGTGTGGCATAGTTTGGAAAATTCTTCTCTATAATATTTTCTGTCTTCAGGGTTGGGTAGGCAAGCCAGATTCCTGAGTCTGAGAAGGATATTCTGGTTTAGATGGTGTAGCCACTTCTTAGCTGGGAAAACTGGGAATGAGGGGAGATGGATCTCTGCTCAGGACAGGTCTGGGTAGCCTATTCTTGAGTCCAGATCAGCCTCACTGAGTTGGAGGACTGCCCGGAATCTCTCCTGCCAAAACAGCTGGAAATGCCCTTCTCTTCTGGAGAGTCTTCTCCATGTCTATCCTTGTGCAGTGATTTTCCTGTTTCGGGGAGGGCATGTATTTGTCTAAATTAGCTCTTACCTTTCATAACTTGTCTGTGTGTTGGGAGGGGTGATGGAGGGGTGTTGCATGTAGGAATGGAGAAGTCATGTGAGTTTTTAAAATTTGGGGTCTCTGGGATTTTGTTCTTATGGCTTCATATTCTTCCTCCAG
Seq C2 exon
TTTTTGGCTTCTGTCTGTGGACTCTGCTTCTTCAGTAAATGACCCTTGAGAAAAACTAAACATTTTCTTGCAACTCTGAAATCATGGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902:ENSBTAT00000006317:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development