BtaINT0165348 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47825273-47834311:-
Coord C1 exon
chr18:47834232-47834311
Coord A exon
chr18:47826169-47834231
Coord C2 exon
chr18:47825273-47826168
Length
8063 bp
Sequences
Splice sites
5' ss Seq
GAGAAAAGA
5' ss Score
-6.3
3' ss Seq
CTCACCTTAGTCGACATCAGAGA
3' ss Score
-1.84
Exon sequences
Seq C1 exon
GAGGATGTTCCATTTCTAAGCCAGATGTAATTACTCTGTTAGAGCAAGGGAAAGAACCCTGGATGGTTGTGAGGGATGAG
Seq A exon
AAAAGAAGATGGAGACTAGGTGAGTAAGTGCTTATCAGGGGAGGGTAAGCTGCTGTGGCACAGCATATCCCTGCAGGTTGGGAAGAAACACAGTCCTTAGTTGTTGATTATGAAGGAGAGACCTGACACCTGAGAAGAAAACTTAGATCTCAGCATGGACAACCAAAGAAATTTCATCTCTACTTCCACTTATCTCTTCTTTTTACACTGTCCTGTTTCCTTCTCATTTCAATTTCCCCAGTGACCACCATTTTACTTGTATTTTGCATCTAATTTCTACTTAGATCATCTTTTGTATTTTGCCTCTTAGGTACATATTTCTTCATTGCCTTCTTTTCATGGTGTTTACATGAAGTGATTAAATATTGTTAAGAAGGGTGAGGAAGTAAGAATATGGGGAATTATGATGGGTTAATTGGGTAATTTAGATAGGGTAATTAAGGAAGAGGAACCAGTTGGCAGAGGCTCTTTAACCTGTAAAAGATGGAATCATTTAAGCATCTGTATACATAACTGAAATGTATTACAACCACATAAAATATACTTAATTCTGAAAATTCTTTTTCCCCCAAGATTTAGTTATTTATTTATTTATTGGCTGTGCTGGGTCTTCATTGCTGCATGTGGATTTTCTTTAGTTGCAGTAAGTGGGAACTACTCTTCATTGCAGTGCATGGGCTTCTCATTGACCTGGCTTCTCTTGTTGCAGAGCACGGACTCTAAGCAAGCGGGCTTTAGTAGTTGTGGCTTATGGGCTCTAGAGCACAGGCTCAGTGATTGTGGCACACAGGCTTAGTTGCTCCGTGGAGTGTGGGATTTTCTGAAACCAGGGATCAAACTCATGTCTCCTGGATTGGCAGGCAGATTCTTTACCCAGCTGAGCCACGAGGGAAGCCCATGTTTTTCTTAAAGTATTCAGTGAATAAATGAAGGATTGTAGACTTAGAATATTACCAGTTTGGAACCTCTAATAAGCTATTGGATCTAGACACTGAACATCACTGCTGATAACATCACAGAAATAGAGACAGTCAGATTGTATTTCTTCAAATGAAAGAATACAGTATCACCTATGAAGTGGGCCTAAGTCTGATGGAGCTTCTGAATTAGCCAGCCACTAATTTATTAGAGGAAGATAGAGGAACATGTTCTACTACATCTTGGGAATACAGTCAGAATATGAAAAATGCTACAGGGTCAAAGTGAAGAAGAACTAAAGAGCCTCTTGATGAAGGTGAAAGACGAGAGTGAAAAAACTGGCTTAAAACTCAATGTTCAAGAAAACTAAGATCAAATTCCATCACGTCACGGCAAATAGATGGGGAAACAATGGAAACAATGACAGACTTTTATTTTCTTGAGCTCCAAAATCACTGCTGATTGTAACTGCAGCCATGAAATTAAAAGATGCTTGCTCCTTGGAAGGAAAGCTATGACCAACCTAGACAGCATATTAGAAAATAGAGACATTACTTTGCCAACAAAGGTCTGTCTAGTCAAAGCTGTTGTTTTTCCAGTAGTCATGGATGGATGTGAGAGTTGGACTATAAAGAAAGCTGAGGGCTGAAGAATTGATGCTTTTGAACTGTGGTGCTGGGGAAGACTCTTGAGAGTCCCTTGGACAGCAGGGAGATCCAACCAGTCAATCCTAAAGGAAATCAACCCTGAATATTCATTGGAAGGGCTGATGCTGAAGCTCCAGTACTTTGACCACCTGAGGCAAAGACCCAACTCATTGGAAAAGACCCTGATGCTGGGAAAGACTGAACGCAAGAGGAGAAGGAGGCAGAAGAGCATGAGATGGTTGACATGAGTTTCAGCAAACTCCGGGAGATGGTGAAGGACAGGGAAGCCTGGTGTGCTATAGTTCATGGGTTCGCAAAGAGTTGGACAGTTTAGCAACTGAACAACAACAATGACAAAGAGTTACTGTTCATTTTTTCAGGTTTGGGTAATGGTATTACAATTATTTTTTAAATCCTTTTAGAGATAAATCCTGAAGTGATTACAAGATATATTATGGGACTTGCTTCAGACAATGTGAGGAGACCAGTGGATAAGGGTCTGCATAGGTCAGTATTGGGCTTGGTTGATGTTGTTGAGGCTGGTCCATAGATAACTTGTACATTTAATATTACTCTTCTACTTTTGTGTATGTTAGAAATACTCTGTAATAAAATTTTGGTTTCTTTTAAAGTTAGTGGGAGATAAAAGGAAAAGAAAGTGAGACAGTGGTGAAAATAAACATATGTAACACTAAAGAGGAATTTTGCCATAAAAGCAGACACATGGGATACAGGGAAAGTATCTTAAGATGTGAGGTATTAGGACCTGTGTAAAGGCTGAAGAGAATGATTTCAAAGAGGAAAACTGATGGCATCAAGAGAGAGGGTGATTTCTGTAAGCAGTGACTTTCAGCAAATGAGTAGAAGTAGGAGCCAATTTATGAAGGAAAACCAATGCATATGATAAGAATATGAACTTAAGTGGTTGGATAACGTGGTAAAGGGGAGAATATCATTTTTCTTTCCATTGCTTCTGATTCTTTGATGAAATTAGCAGAATGTGAAAATTATTTGGAATTCAGTATGGATTACTTAGTATTTAATCAGTTTTGACTTTCAGAAGTACAGTTCTGTGGTTATAAGGTTTTAACATTTACAGATCTCTGGATACATTACCCCTGGTGTTAATGTGACTAAAAGTGCTTCTGTCATAAATATTATACATTCATATCATCTTGTATCAGCAAAGTTATTGAAGACATCATCTCAGGAAACAAATTAACTTTATGACCAGGTAATTAGCTCCTTATTTTCTTTTTAATTAAAGTTGTTATCCTGCCAATGGAAATAACATTTCTCCTTTTACATTGCTCTAAGATGGGCTAATATTTTGCTTTTGCATCAGCATCATTTACTAGAATAAAGCCCTTTGATTCAATAGACTACAAACTAGTATTTGGTTTATTTTGAGTAGCTAAATATTTTGTATATGTCTTTTGATGTTTAGTTTGTCCTTTGTTTCAGTGCTGGGCCAATTTTTTCTTGATTTAATCACATGTATAGTGCATAGGCTATAATTTCTAGTTTCAATTTATTTAAAGTAGAACAAGAATCTAAAGATACTTGTAAAGCAATCTGTGTGCAGAGTCCTTCATGAATTTTTATGTTTCCCATCAATCTTTACTATTTTCTCACTGTCTACTCTGAAACAATGCAGTGTGCATCTATAGTCAGAACTAGCAAAGCACTGAACCTAGTTTTGATTGACTGAAATGGCTGTCTTTTAGTTTCTTGAAGGGGAAAGAACTGGCATAAATGAATTTGGGAAAAATAATGGCTGACTTTTTACAGAAGTTGTAAGATTACAGTTCAGTTGTTTATACGGTTGACCCTTGAACAACATGAGTTTAAACCGCATGGGTCCATTTATACACGGGTTAAAAAATAATAAATGTGTAGTACAGTACTGTGGGCTTCCCGGGTGGTGCTAATGAAGAACCCACCTGCCAGTGTAGGTGGAAGAGATGTGGGTTTGATCCCTGGGTCAGAAAGATCCCCTGGAGGAGGGCATGGCAAACTATTCTAGTATTCTTGCCTGGAGAATCCAATAGACAGAAAAGCCTGGCAGGCTACAATCCATAGGGACACAAAGAGTTGGACATGACTGAAGTGACTTAGCATACACGCACAGTACTATATGATCTGAGGTTGGTCGAATCTGTGGATGGGGAACTGCGGGTATGGAGGGCCAACTGTAAAGTTATACACAGGTTTGCAATAGAGGGGTGGTATTGGCCCCTATTACCCCAATGTTCAAGGGTCAACTGTATTATAGTCTCCTAGATGTGAATATTCAGCATGCCGAAGTCTTAATGTGTCATGTCAGGCAGGGAAGCCATATAAATGTCTCAGTTATGACCTAGCAATCCCACTCTTAGACATATACCCTGAGGAAACTCACACTGAAAAAGACGCATGCACCCCAATGTTCATTGCAGCACTGTTTACAATAGCTAGAACATGGAAGCAACCTAAATGTCCACTGACAGATGATTGGATAAAGAAGTCGTGGTACGTATACACAATGGAATATTACACTCAGCCATAAAAAGGAACATATTTGAGTCAGTTCTAATGAGGTGGATGAACCTAGAGCCTATTATACAGAGTGAAGTAAGTCAGAAAGAGAAAGATAAATATCATGTACTAACACATATATATAGAATCTAGAAAGATGGTACTGATGAATTTATTTGCAAGACAGCAATAGAGAAACAGACATAGAGAACAGACTTATGGACACAGGGAGAGGGGAGGAGAGGGTGAGATGTATGGAGAGAGTAACATGGAAACTTATATTACCATATGTAAAATAGATAGCCAATGGGAATTTGCTGTGTGTCTCAGGGAACTCAAATAGGGGCTCTGTATCAACCTAGAGGGGTGGGTGGGGTGGGGAGGGAGGTGAGAGGGAAGTTCAAGAGGGAGGGGAGGTATGTACACCTATGGGTAATTCATGTTGATGTTTGGTATAAAAGAACAAAATTCTGTAAAGCAATTATTCTTCAATTTAAAAATAAATTAAGAAAAAGTCTCAGGTTCACTATATCCACACGGGGAATGTTTTGTTTGTTCTTTAAAACTTTCAAATTCTATAGGGTAAGTATTGTAACTTCTGCTTTTTTTTCTTGTAAATGAGTAAATATGGACATTTTGCCCTCAGTGTGTTTATATTTTCATTTTGTGCATTGTCTGCTCACTTCCTTTATTCTCTTACTTTTTCCATTGTTTAATGTTTCTTATACCAGTTTGTATGGGCTTTTGTGCTGTATATACACTTTCTCATTTTTCTTACCAATATTTGGGCCTTCAGTTTTTATTTTGACTCTTATTTTCCTTTAAATCATTGATTTTTAATTTGCAAGTAAATTCTATGAGATCACCATCTGTCATGCCTTTGTAGTTACCTAGTTATTTACTACTGTTATGACTAGCTAATTACTGTTAATTTTTTATATCATTTATAACTTATTTGCCTTAATGAGGTGTTAAATTTTTTTCCCAGTAATTTTTACAAAATTACATTAGTTTTACATTGCTTTCTTGAATAGGGAAGATAGACAGGGAGGGAAAGAGAGAAGGAAAAGGAAAGAGTAAGGGAAGGAAGGGAAGATGGTGGGGAGAGAGAGAGAAAGGAAAGAGAAAGAGGAAGGGAAGGAGGAAGGGACAGAGGGATGAGAGACAGAAAGAGGCAGAAAGATACTTAGATTTCATCAGAGTATCTTTTGTGACATTCACTTATTTGTCTCTGCTCACAAATTATCTACAGTATTTAAATCATTGTTGCCTTTTAACATCTTTTTATTATATCCTTTTAAAGTAAACTTTCTGAAATACATCCAAAAAACAGAAATCATAATACGCTGCTCACTGAATTTTTGCAAAGTAATTATACCCAGATAATCAGTATACTGATTCAGAAATAGTTTTAGTAGGATATCAGAAACTCCTCTTTAGGAGAAGGCAATGGCAACCCACTCTAGTACTCTCGCCTGGAAGACCCCATGGACGGAGGAGCCTGGTAGGCTGCACTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCAACTTCCCTTTCAGTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTTTGGGGTCGCACAGAGTCGGATTCGACTGAAGCGGCGGCAGCAGCAGCGGAAGCTCCTCTCTAGTTTTCTCCAGTCATTCCTCCCTATCAAAATTAACTACTAGCCTGACTTTTAAAAAGTCCATAGATTAGTTTTAGTGTTTATGAGCTTTATAAAAATGGGATAATATAGTATATATTATTTTATGCCTGGCTTTGTTTGGTCACCCTTATGTTAGTGAGAATGATCCATATTGTTGTGTGTACTTGTAGATTATTCATTCTTATTGCTGTTACAGTTTGTTCTTATTATGTTGTATCCATATCTATATATATATAACTTTTCTCAGTCATTCTTCTGTTAATGAATACTTGGATTCTTTCTACTTCATGCATATGAAAAATAATGTTGATTTTTTTAAAAAAATACATTTTTTGCTCAGAATTTTACTAGCATGTTACTATTTTATAAACCTGTTGCTATGACTGAAAAATCACTAATATACTTTCTAGACAGTAACTAAATGGCACTGGCTATGATGCCTTTAGGGAGAATATAGGAAAGGGTATGAAGAAACAAAATGGGCTGCATATTTGTAATATACTTGTGTATAGTTAATAAACTTGAAGATAAATAAGTAGAACCTTGCATTACCTTGGTTGGAAAAGTGAGGTTCATTTACAGCTATGTAGACAGTGAGCTGAAGTGGAGATATCTGCACGTGAAAGTAAAGAGGCCACTGGAGTGATGAGCAGATGTAAAGGAATTTTTCCATTTCTGTATTTGATTGAGATAGCATTGGTGTGCTTTTGTCTCCCATCTCTATGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCAACTCTGTGCGACCCCAGAGACAGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTTGCTAAGTTGTGTCCGACTCTTCACGACCCAATGGAGTGCAGCCTACCAGGCTCCTCCGTCCATGGGGTTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATCGCCTTCTCCGTCCCATCTCTATATAAAGTGCTAAAAAAAGGTGTAAGATTGGAGGCAAGGCAACATATATATTTTTACTATTAACTAATTATGAAAACTTAATAATAAATAGTTTCTCTGTGCTATGGATTTGTTATTCAGTGATAAGTGAAAGAGTTTTTCTTCTCTTGGGAAATTGTTAAGGTAAGAGCACAGAATAAAAACTTGGAAAATTAATGAATATATCACAACAGAATTGAAAAAAGTGCTAAGAAGCAGGGGACAAATTATTGGGATAGAAAATGAAGGATATAAATTAGATGAAGTCAGAACAGATAGCTTTTCTGACTTTTATCATGATATCTGAAGGATGAAAAGAACCCAACCATGTGGAGAACCCATCAGCATTCCTGGGAGATTTAATAGCCAGTAAAAAGCTCTAAAAAATGGAAAGATTGTGACATATTTTAGTAGCTGAAAGGAGGCAAGTGTGACAGACATAGGGAGTAAAGGGGTCTACAGCTTGAAATGACATCTTTTGGTAAACAAAGGCTGTGTTATTCATAATAAAGTGTTTTTACTTTATTCTTACTAAAAAATAAATCATTAAAAAGTTTAGGTAGAGATCTCAGACTTTAATTTGCTTCTGAATTATCTGGTCTTAACTCATCATTTTCTTTATTCTTCTTAGCTTTTCTCAAGTTATATTATTTTTTTAAAGTACTTTTAAGCACATTTATTTCAACTGGACTTTATTTTCTTTTTTCCTATTATAAAGTTTTTATTTGCTTCTTTGTTTACTTTTTCTAGAAGAAAATAACATGTGTTTTATCTTCTTTTCTTTCAGATTTGGAATCCAGATATGACACTAAAAAGTTATTTCAAGTAAAGGATATTTGTGAAATGAGTTTCTCTCAGTGGGAGATAATGGAAAGAATTAGAAGTTGTGGCCTTGAAGACTCTTTTTTCAGGAAAGATTGTGAATATAAAAAGTTTGAGAGACAAGAGGGTCCTCACGAAGCATATTTCAGGCAAGTGAAAAAAACCACCTCTGAAAAAATGCCCAAGAACCGAAAACGCACATCTCTTACTCTGTATCCAAGAATTCATAGTAGAGAGAAGCCCTATGAATGTGGGGACTGCGGGAAGGCTTTTAGAGTACGCCAACAACTTACTTTCCATCAGAGAATTCATACGGGTGAGAAACCGTATGAATGTAAAGAATGTGGAAAAGCTTTTAGGCAGTGTGCTCACCTTAGTCGACATCAG
Seq C2 exon
AGAATTCATGCTTCTGACAAACTCCTTGAATGTAAAAGATGTGGAAAGATCTTTACATGTGGTGCAGATCTTCGTGTACACCAGAGAATTCATGTTGGTGAGAAGCCATATGACTGTAAGGAATGTGGGAAGGCCTTTAGGGTGCGAGGACAACTTAATCTCCATCAAAGGATTCATACTGGTGAGAAACCCTATGAATGTAAGGAATGTGGGAAGACCTTTAGACAATATGCACACCTTACTCGACATCAAAGACTTAATATTGCTGAGAAATGCTATGAATGCAAGGAATGTGGGCAAGCTTTTCTGTGTAGTACAGGCCTTCGAGTACATCACAAACTTCATACTGGTGAGAAACCTTATGACTGTAAGGAATGTGGGAAGGCCTTTAGAGTGCGGCAACAACTTACTCTTCATCAGAGAATTCATACTGGCGAGAAACCCTATGATTGTAAGGAATGTGGGAAGACCTTTAGTCGTGCCTATCATCTAACTCTCCATCAGAGAATTCATACTGGTGAGAAACCTTATGAATGTAAGGAATGTCAGAAGTTCTTTCGTCGTTACTCAGAACTTATTTCACATCAGGGTATTCATATTGGAGAGAAACCTTATGATTGTAAGGAATGTGGGAAGGCCTTTAGACTGTTCTCACAACTTACTCAACATCAGAGTATTCATTTTGGTGAAAAACCTTACAAGTGTAAGGAATGTGAGAAGAATTTTAGATTGCTCTCCCAACTTACTCAACATCAGAGCATTCATACTGGTGAGAAACCCTATGACTGTAAGGAATGTGGAAAGGCCTTTAGACTTCATTCGTCTCTTATCCAACATCAGAGAATTCATTCTGGTGAGAAACCATACAAATGTAAGGAATGTAAGAAGGCATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902:ENSBTAT00000006317:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development