Special

MmuINT0178953 @ mm9

Intron Retention

Gene
ENSMUSG00000047473 | Zfp30
Description
zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
Coordinates
chr7:30574357-30579559:+
Coord C1 exon
chr7:30574357-30574455
Coord A exon
chr7:30574456-30577378
Coord C2 exon
chr7:30577379-30579559
Length
2923 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTCTTCTTTTTGCTTTCAGATC
3' ss Score
12.51
Exon sequences
Seq C1 exon
CAGGATGTTCCATTTCTAAGCCAGATGTGATCACCCTGTTGGAACAAGGGAAGGAGCCGTGGATGATTGTGAGGGCTGAGAAGAGAAGGTGGAGCCGAG
Seq A exon
GTGAGGGAGTGCTCAGCAGGCACCTGTGGTGGTGACTGTTACACATCTGCTGGCTGGAGGACACGCCCCTGAGATGCTGACGGGGAGGTTGAAAGATGCTCTCCTGAGATGCTGGGGAAAGAGACATGAAACTTGGAAAGAAAACTTAGATCTTTCAGCATGAGTCACCAATGACATTTCCTCTCTACTTCAGTTTGCCATTTGTCTCTTTCCCACATTTCCCTTTCCTTTCAACGTGGGAAAGCTTTCTTGTCTGGTGATAATAGTTTTGCCTGTTTTATATCTAATTTCTTCATAGATAATCCTTTGTATTTTAAATCCGCCCTGGCGCACCCTTAAGAAATATCCAAATTAGTTTTATTTGTATGGTTGCTTTGTCGGTATGTCTGTCCATGCATCGGCTGCATGTCTGATGTCCACTGAGGCCTGGAGACCATGGCTACAGGTGGTTATGGACAGGCCACTATTTGGTGTTGGAACTTGAACTCTGATGCACTGGAAGGACAGCCAAGTGCCCTTAACATCAGGCCATCTCAACAGCCTGATTTTCTTTTCTGAGAAAGGGTCTTACTGTTCACAGCAGCTGGTTGTGAACTCTCCATCCTCCTGTCTCAGATCATCTCCAGCCCTGGGCCTACAGGCATGTGCCCCTATGCTCACTTTGTATTTCAGTTTTCCTGTATCGATTTATTGTTCTCATTTCCTGGGATTCATATTTAGTAATGAACTCATACAATAACCGGGGATAGAAAGGTGGCTCAGTTGTTAAGAACCCTGACAGGTAATCATATAGGATCTGGGATCTGTTCCCAGCACCCACACAGTGGCTCACAATCATCTGTAACTCCATTTCCAGTGGACACAATCCCCTTTCCTGGCCTCCAAGGGCACTCACTGTATGCTCATGGCACACACACATACATTCAGGCAAAACACATGTAAACGTTAAAAAAATAGCAAGTCTGTGCTTGTGGGGGGTGAGGGGGGATAGCTCAGTGTTGGAGCAGCTAACCATGGCCTTGATCACCAGCATCACACAAGATAAAACAAAAAATACCTGGCTTGTTAATATCCCCAAATGGCTAGGCATGGTGGTGCAAGCCTTCAGTCCCAGCACTTCAGAGGCAAGTGGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTAAAAGTAAGTTCCAGGCTAGCCAGGGCTACATTGTGAGACTGTCCAGGTGGAAGAAAACAGACCTGAAGTGATTAAGTATTAGAAGAAAAGCAGATAGGGTATTTGTAGCCACCCCGGCGGCCATGGGTTACTGGGTTCCTGAAAGGAAAGCTGGGGTTGGATGGAAAAGGCGGCGAGAGAAATAACTAGCCGAGACAAATCTGATCAAGGCTCAATCTTTAATGTGCAGCACTGAATATATATGGGAAAACCCAAGGACCCATCCCTTTGTTTCAGCTGGGTTCCCTTGCTAGTTTCAGCTGGTTAGAGTTGTAAAGTAGGCTCTGCCGTGGGCAGTTCTCAGTTGTCTGGCAGGAAGATGTAAATGTAACAAAGCCAGACTCCTGGCTCCGGTGTCTGAGGAGGTTTGTTTAGCCAACTCAAACCCGGGGGGGAAAGGCACACACAGTATTGATATGGCGAATTAGAGACCAGAGTAATTTGAGAATGGCCAAGAAAATAGAACCAGTCTAAAGAGGTTCGGATTGCTAAAAATGGTTGGCTAGAGATGGGATTCCTTGAACATCAGTTCCCATAACCTCAATGCCTCGCAACACATAAATTACACTTTATTCCATAATGGCATTTTTGGTTTTGCTCATTCGTGCTGGATGTGGTAGTCCTACGGGGCCTCACACAGGCCACCCGGGCGCTCTACCACAGCTGCAGAGTCCCCACGGGTCCGTGTTCCCTCCCATCAGTCTTTGTAACAAGTGCCTCCGATGCAAAAGTCGGGTCCGGTTCTTCCTCCCAGCCCCATGCTCTCAGAAATAAGACTCAGACTCAAAAAATATTACAGATACCTCAGCCTTGTGCCAGCCCTCAGGACTAGTCTCAGACGAGATCAAAACTTAGATAACCCATGTGCTTTAACCTACATCCTGACACGTGGCTGGTTACCTGGGCTCAGGTACCATGTGCCCATCTCCTCACGTCTTCCCGGGCCGATCTCCAGTGCCTCATTCTATCCCAGAATCCTTTGTGCCTCCTGGATGTCCCATCTCTATTTCCTGCCTAAGCCATAGGCCATAGGCTTTTTAATTGACATACAATACACAGATATTCTCTCTCCATTCCAGAGCCTTCATCTCAAGTTTCAGAGGAGAGCATCTCCTTAACTGTGAATAGCTTCAGTTGTCTGCAGGAATGTAACTTCTCACAGTCAAACTTAGGTACAAACACAATAACTCCTTATAACAGAGCCTGTTTATCTACAGAGGAGTTTCATACTTACTTGAGACTGTTCACAGTGCCAAATTCTGGTTTGTTTTGTTGAAAAAAAAAAAAAAAAAGGACTGGGCCTTATTACATAACCCTGGTTGAAATGGAATTCACTCTATACATTATGCTGACCCTGAACTCCACCTGTCTCTTCTGTCTCCTGAGTGCTGGGATTAAAGGTGTGTTTGGGCCACTACATCTCACCCTTCATTTTTATTTTCAATTGTGCATCTAGACATGCCATCTTCCTTATCCTTCTTAAACCTTTTTTTTAATTACGTGATTATTTGGGGGCTGCTAAGTCCATTCAGCTGCTTGTTGTCTTTTCTTTTCCTTGTCTTGAGCGAAGTCTTGTGACGTAGCTCAGGCTGGCCTGTAACTGGAGCTTTTAACTCTGCCTCCCGCGTGCGGACAGCTAGAGGCTTGTTTTCGTTACTATTATTTCTTTATTTCATCCAGATTAGGACGGTACCATGCGTTTTTCTTCTTTTTGCTTTCAG
Seq C2 exon
ATCTGGAATCCAGATACAGCAGTAACGGGTTACTTCCAGAAAAGAATACTTACGAAATTAATCTATCTCCGTGGGAAATAATGGGAAGAATTCAAAGGCGTGGCCCCGAAGACTCCCTTTTGGGGAAAGACTTTGAATATAAAATATATGAAGAACAAGAGAACTCTCATAGGGTATATTTCAGACACGTGATAAAAACCACCTCTGGAAAAAGACCTCGGTACAGAAAACGCACACCTGTTAGTCTCTATCAGAAAACTCCTAACGGAGAAAAGCCCTACGAATGTGGGGAGTGTGGGAAGGCTTTCAAAGTCCGCCAACAACTTACTTTCCATCAGAGGATCCACACCGGCGAGAAGCCCTACGAATGCAAGGAATGTGGCAAAGCCTTCCGACAGTGCGCCCACCTCAGTCGCCATCAGAGGATCCACGCCTCTGACAAGCTCTATGAATGTAAGAAGTGTGCAAAGATCTTCACGTGTAGCTCGGACCTTCGAGGGCATCAGAGGTCTCACGTGGGCGAGAAGCCCTACGATTGTAAAGAGTGCGGGAAGGCCTTTCGAGTCCGTGGACAGCTCATGCTCCACCAGAGGATCCACACCGGTGAGAAGCCCTACGCATGCACGGAGTGCGGCAAGAGCTTCCGGCAGGTAGCGCACCTCACTCGGCATCAGAGGCTCAACAGTGGCAGCTCACGCCACGAGTGTAAGGAGTGCGGCCGGGCTTTCCTGTGCAGCACGGGCCTCCGGCTGCATCACAAACTGCACACGGGAGAGAAACCCTACGACTGCAAGGAGTGTGGGAAGGCGTTCCGGGTGAGGCAGCAGCTCACCCTGCACGAGAGGATCCACACCGGCGAGAAGCCCTTCGACTGCAAGGAGTGCGGGAAGACCTTCAGCCGCGGCTACCATCTCACCCTCCACCAGAGGATCCACACTGGGGAGAAGCCTTACGAGTGTAAGGAGTGCCGCAAGTTCTTCCGCCGGTACTCGGAGCTCATTTCCCACCAGGGCATTCACATCGGGGAGAAACCCTATGACTGCAAGGAGTGCGGAAAGGCTTTTAGGCTGTTCTCCCAGCTGACTCAGCACCAGAGCATTCATTTTGGTGAGAAGCCCTATAAATGTATGGAATGTGAGAAGACTTTCAGACTCCTCTCACAACTGACGCAGCATCAGAGCATTCACACGGGCGAGAAGCCTTACGATTGTAAGGAGTGCGGGAAAGCCTTTCGCCTCCACTCGTCTCTCATTCAGCACCAGAGAATCCACTCTGGCGAGAAGCCGTACAAATGTACGGAGTGTAAGAAGGCCTTCCGTCAACACTCACACCTCACCTACCATCAGCGAATTCATAAGAATTTGTAAGGACCCTTCTACGAATCCTTGCCTTGCAAATGTACTAAGGAGCAGTAGGAAATCAGAAAATTCTAGAAGAAAAAAAGGTTTGAATCCTTATTTTGCTGTGTTCATAAGTAACAGCATAAAAGGTCAAAGGAAAAAAATGGTAAACTTTTGGAAATTCTTTCGTAAATGTATAAAAGGTATTTTGTCTTACTGTACACCTACCTAAGGGCATAGTCAGGGTACCAACTCATTTTGAAAATTAATAAATAAAAAGAATTGTCGTTTAGCCTGCATAAACTCTCCGAGTGACTGAAAGTGGTTGAGGTACACAGTTCTTAGAGTGTTTCATCAGAATCACGCAGAGTCATATGGAATTAAGAAGTTGTATCAGGAAAACCATTGTGTAATAACATACAGTGGAGCAGCGATTCTCAGCCTGTGGGTCCCGACCCTCTGAGGGTAGAGCCACCCTTTCTCAGGAGTCACCTAGGACCATCGAGACACAGATTCGCATTATGATCCATTACAGTAGCAAAATTACAGTTATGAAGTAGCAACACGTGATTTAATGGTGGGAGTCACCACAGCATGAGGAACTGTATTAAAGGGTCACAGCGTTAGGGAGGTTGAGAACCACTGCTCTAGAATTCAGCCATGATAGACTGGCTTGTACTTGGTAGTGAATAGGTCAGGCTGCCAGGATGTGAACCTACTGATCCGTCTTGCCACCAGTGTAGCACAGTAAAGCGTCCCGTGTCTTCCACTGCGACATTGTGATATTCCCACCTAACTCAACGCACCAAACCTCTAAATCAATGAGACAACCACCAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047473-Zfp30:NM_013705:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.033
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF097235=Zn-ribbon_8=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000032803





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000113426, ENSMUSP00000128930
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:37636306-37643264 
HsaINT0185521
Human
(hg19)
chr19:38127207-38134165 
ALTERNATIVE
HsaINT0185521
(ZFP30)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:47826169-47834231 
HIGH PSI
BtaINT0165348
(ZNF345)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"