BtaINT0165368 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002281 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:HGNC:16736]
Coordinates
chr7:2184943-2189503:-
Coord C1 exon
chr7:2189408-2189503
Coord A exon
chr7:2186271-2189407
Coord C2 exon
chr7:2184943-2186270
Length
3137 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
ACTATTCTGATTTATTCCAGGTT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GGATTCCATTTTCAATGCCAAAATTGATCTGCCAGTTGCAACAAGGAGAAGATCCCTGTATGGTGGAAAGAGAAATCCCTCAAGATACCTGCCTTG
Seq A exon
GTGAGTAAGTGACTGGGGGATTGGGCACAAGTGTCTTTATACATAAGCAGGTTGTGAGGAGTGTTTGAAAACTCTCCTAGAAATTCTGAGCCCTGTTGAAATGCTCAGGACCACCTGACAAGGCTCCTTGGCTGTAATGGTTTTCTTTCATCATGAAGGTCCTTGCCTTGACATTTTCCTTCTCATACCACTCCCTGCATTCTTTCCCTCCCCACCACCTTTTGTTTTGCAGCCTCACTCACTTCCTTCTATCACCTCTTGATCTTCATGTTATTTTTCCATCTGCATTTACACATGTTCATGTCTGACAGATTTTTTTTTAACACTTTACACCTTCTGCCATATTTTGAATTTTTTTAAATAATTTTTTCATTTTGTTTTTACCATCCACATATTTCAAAGTATTATTAACATTCCTTTGTCTCTGATTTCTTATTTTCTTGGTGACTAGATTGTCATATCCCAGTATTATATATTCAATCAGCTGTTGTTAACATTACCCCCGTAGCCTTTCCAGTCCAGGGGTCAGCAAGCATGTTGTTCCTGGTGGGCTGCGGTGCATGGAGTCACAAGGAGTCGAATGTGACTGATCACACAGCACCACCACCACCAGGCATTAAGGATCATGGTTTGAATTCAGACATTCCGAATTTTGTCTTACCCTTACCCCTGCTTACATGAGCTATAGGATAGTTACCTACCTTCTCTGAGCCTCTTTTTTCTCACTCATTTTCCATGCCATGAGCACAGTGATCTTTTTGAAACTCATGTATTTATCCTGTACCTTAAGAGACTTCATTGTTTCTCCATTATCCATGGAGTAAAGAAAGATTCCTTAATATGACATTAAACCTACATCTTAGCCTGTCTTCATATTCCTTTATGGTCTCCTCAGTGGCCACTTCCTCTTCAGCTCAGTGTTCTGGCTACATCTGCATACTCACTGTCATTTGTGTGTTATTCCTTCAGCTTGAATCACCTTTTCTACCTTGTCCATTGGGAAACTATTTATCTTTCAAGATCCATTTGTCCACCTAATATGCCACTCTTATCTGTAGATTTTTCTTATCTTTCCTACTTGCCTCAGTTGTTTGCTTGCTCAGTCATGTCCGACTCTTTTAGACACTATGGACTGGCCTGCAAGGCTCCCCGGTCCATGGAATTTTCCAGGCAAGAATACTAGAGTGGGTTGCCATTTCATACTCCAGGGCATCTTCACAACCCAGGGACTGAACCCGTGTCCCTTGCGTCTCCTACATTGACAGGCAGAGTTGTTACCACTGCACCACCCGGGAAGCCCTCCTACTTCCCAGGCAGCATTAATTTTTCCATCATTCATGTTCATACAGCACTTTCTACATAGTTGGAGTGCATTGATTATTGTATCTATCAAATGAATTGTAATTATGTTTGTTAATTATTTTTATAATAAGATTGTGCATATTTAAGGGAGAGGCCAGATCTTTGAATTCTGTTCCTCAAGCATCTGATATATTAGATTTAGTAATATTTTAAAAAATTTTTTAAATTCTGTTTTAATTGAATTAATTAGCTCTCTGATTAACTCAGTGCTGATGAGACTCAAGTTACTCAATTCAGCCAGACCACTGCAGCTACATTATTTTTCAGATTCCATTCTGTCCTTCCTCTGATCCAAGCTGCCCATTTTACCAAATATAAACATTTTTGCCTTGTTATTATCTGTCTAAGAATTTATAGCACCTTCTGTTAGTAAATTCTTCTAGTTATTTAGTAACTGTATATTTGGCCTTACTGTGCTTAACCAAAATTGTAACTAATTCCAACTCAAATTCCCTTCTTTAGTCAATAACCTCCCCCCCCCCCCCCCCCCCGCCACATAGGTTTACTTTCTCCACAAATGACTTTAACAGGCCTTCTTTTTGACTCACAGGGTCCTCTTTTCTTTTTCTGTTGAAATCCAACCCACCTCTATTGTGTATCTTCCATTCTTTACCAATATTATTGATATTGGTATCCTCATTTTCTGAACCTTAAATCTGAGTATGCAGTTGAGTCTTCTCAGATCATGGAGAAATGAACTATTACTGTTTGGCCATTTATTTTTTTCCTATTATCATTGCTAATTATTCAGTATTTGTTCAATAAATGACTGAGTCTCAGGAATCCAGTAAGAGAGGAGAGGTCTCTTTTCATTTTCAAGGTTACCTGCCCTTCATAATAATTTTTCCAACTTGGCCACTCTGCTCATTCATTCTTTATTTTTTATCTAAGACATTCTAATTGTGTACTTATCTTGTACACAATAAAGAATTAACAAATCATCATAAGACATAGCTACTGCTCTCCTTGAACAAATAACTTTGAATTATTTCCACAAACTTTATATATGTAAGTTAAGTGATTGGATGTTTGGAAAATATGTTTTGAAATTTGCAGAAAGAGGTGGATTATTTAGGCTTAAGTAATTGAGTTTTTGTAAATAAATAAGATTAGAGTAGTAGGGTACATTTCTAGATAGACAGGGAAGATCATATTGTAAGAAAGAGTAAAAAGAGAGAAGGTACCTGGTTGATCCTTGAAAATCTGAACTGCTAGGTTTCCGATGGATACCATTAAGAAAGATCTATATTCTTATGCAGATTTATAGCCTATATTTCATATTCTTATTTAATTTCATTAAATATTTTTATTACTAAAACCAGATAAACTTTATTAACATAGATAATCTATATTTTATTTAATTTGTATAGTTTATTTAAGTACACACAGTCACCTAATTAGTGATATAACTTTAATCTATTTTCAATCATGGATTGATAAAAGTAAGCCAGGTTTTAACTCAGAGTTTCTTAGAATCAGCTCAAGCTAAATCTTTTCACTTTAGAATCAGATCTGAGCTTGGGGCTTGGGCATACTTCAGAACGTCACATCTCTTGTAGACTTTTGTTAGTCTCAAAAGATCCCTGCCTTTACTTCTCTCAGATGGCAATATCTTCGTTGTCACTGTTAATTTGTCTACTATATTCTCCCACACTACTCCTGTTTACTTCTCCTTCCATTCTATCCTGTTTTTCTCTAGATTCAAGTCCATATTTGAAATTATATGGTATCAAACTCTCTTCTAGCAGAGGAGCAACTATTCTGATTTATTCCAG
Seq C2 exon
GTTTCAAGATATGGCCTGAAATAGAAGCATTGCCTCGCAAACAGGACATTTCTTCAGGAGAAACATCTCAAGGAATAATAATGAAAAACTCCATTAAGTTGGACATCAAGTGTGGAGAAGCTTTGGAATTTGAGGGCAGGACACAAGAGCAACAGAAAAAAACTCTCAGGCAAATGGTAGCCTCACAGAAGCAAACCATCAGTAGAACTGGAGACCAGACAAGTCTTGAATTAGGGAAAGGTTTATTTATAAATACAGTTCTTATTAGACAACAAAATGTTCCTACAGAAAGAGTACCCAGTGTATATTATACTTTTGGGAGAGATTTTAAACAGAATTTTGATCTAATGAGATGTTTCCAGATTTACCCAGGAGAAAAACCTCATATTTACAATGCATGTGATAAAAGCTTCAATCAGAGTCTTCATCTTATTGAACGCCAGAGAATTCATACTGGTGAGAAACCTTACAAATGTAGTGAGTGTGGGAAAACCTTCAGCCACAGATCATCACTTCTTGCCCATCAGAGAATTCATACTGGAGAGAAACCTTACAAATGTAATCAATGTGAGAAAGCATTTAGTAGCAGTTCAACCCTTATCAAACATTTGAGAGTGCATACTGGAGAGAAACCCTATCAGTGTAAGGACTGTGGTAAAGCTTTTAGCCAGTGTTCAACCCTCACTGTACATCAGAGAATTCACACTGGAGAAAAACTCTATAAATGTGGAGAATGTGAGAAGGCCTTCAATTGTAGAGCAAAGCTTCATAGACACCAACAAATCCATACAGGTGAGAAACCCTATAAATGTAGTGAATGTGGGAAAAGTTACAGCCAGTTTACATCCCTGGCTGAACATCAGAGGCTTCACACTGGAGAACAACTGTGTAAATGCTTGGAATGTGGGAGAAATTTCACTCGCATCTCAACCTTTATTGAACATCAGCGGATTCATACTGGACAAAAACCATATCAGTGTAATGAATGTGGGAAAGCCTTCAACCAGTATTCATCCTTTAATGACCATCGGAAAATTCATACTGGAGAAAAACTTTACACGTGTGGAGAATGTGGGAAAGCCTTTGGTTGCAAATCTAACCTTTATAGGCATCAGAGAATCCATACTGGAGAGAAACCATATCAGTGTAATCAGTGTGGAAAAGCTTTCAGCCAGTATTCATTCCTAACTGAACATGAGAGAATCCATACTGGAGAGAAACTCTATAAATGTATGGAATGTGGGAAAGCCTACAGTTACAGATCAAACCTTTGTAGACACAAAAAAGTTCACAATAAAGAAAAACTCTATAAATGGAAAGAATATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002281:ENSBTAT00000021140:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]