MmuINT0179079 @ mm10
Intron Retention
Gene
ENSMUSG00000044807 | Zfp354c
Description
zinc finger protein 354C [Source:MGI Symbol;Acc:MGI:1353621]
Coordinates
chr11:50811086-50817211:-
Coord C1 exon
chr11:50817119-50817211
Coord A exon
chr11:50815994-50817118
Coord C2 exon
chr11:50811086-50815993
Length
1125 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
ATTCTTCCAATTCTTTTCAGATT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGTTTCAGGCTTCAATACCTCCTGTGATTGGCAAGCTGCAAAAAGGGCAAGATCCCTGCATGGAAAGAGAAGCCCCTGAAGACACCTGCCTAG
Seq A exon
GTGAGTGAGCCGTTGGAAAATGGAGACACAGAAATCTACCTGAGCATGTCAGGAAAGGACAGTGGCACAGTGATGTTTTTGTGACTAATGAGCCCCGTGGAGATGCTTAGGGCCTCTTGTGTTTAAGTGGATAGCTTGTTGACGTGCAGCCATCTAAATGCAATGTTCATCTATTTTCAGTTACGGATCGAGTAAAGAAAGCTTGGCGTTTCTTAACGTGAACAAAGCTAAATCGTTTCATGTAGAGTTACAGCTAAACTTGAGGTGGGGACACTCTAGAACAAATTGACTTCATAGACTTACAGATTTGCATAAGATTCCTACAAAGAGAATGCAGTCTTCTGGTGCCAGCTTACAGAGGAAATGAATAAGTCATTTCTCCTCTGGCCTAACAGAAAGGTGGGAAGGGGCGAGAGAGAGCAAGAAAGCATGCCGTTCTTTCAGCCTGAGGGGAGAGGGGTGCACATGGCTGGCCCGTGCTATAGTTTTTCATTGTGATTGATGTGTTGAACTTGCGTCTATTGTAATATTTAACATCAACTTTTTTTAATATTTAATATTTAATATCAAACATCAACTTTTTGACAGACCACTTTCCCCTTTCACAGACTGTGATGAAATTACAGTTGAGTGTGAAGTCACAATTTTAAGAAAAACAATCAATATCTGTGGGGTTCAGAGGGCCATGAGGGGAAATGCAGTGACCGTGACTGAGAAACAGGAAGCAGAGGGTGCTGCCTGCGTGTGCAGGGTGCTGCCTGCGTGTGCAGGGTGCTGCGTGTGCAAGGTGGGAAGGAGGAAACAGAGACTCCTGGTGCTTAGCCTCAGCTTGTCCCTTCACAACGTTCCATACGACCTTAAGTGGTCTGCTCTGTCCCTCCCTGTCTGGAGTTCCTGTTCTCTAGAACTACAGTCTCCTCAGCTTCAGGACTGCTTTGTCTAGTTTATCCTCATACCCTGCTCCTCAGCCCATTTACCTCTGATCATCCCACTTCCCTCCAGATCCAGGTCCATGTTTGGGATCAGGCTGCACCAATCCTCTTTTCCCTGTTACTGCCAATCTCGTCGGCTTTCTGATGTCTCTATTCTAGCAAAGGAAGAATTAATTCTTCCAATTCTTTTCAG
Seq C2 exon
ATTTCGAGATTTGGCCAGAGATAGAAGCATTGCCACCCAAACAAGATGTTCTTACTAAAGAGACATCACATGGGCTGATAAAGAATGGATCCACTAAGTGTGTTTACTGGAAAATCAGCTTTGGAGAGCTTGTGAAAACTGAGTGCCGAGATATAGCACAGGAGCAAGAAAAGAAAGTGCATGGGCCAGGGGCAGAGTCACCCAAGGAAACCACCAGTGAAGACGGAACTCCCACGGGCTTCGAGCCGGAGAAACCCTTGTTCATTAGTAAAGCACTTGTCTCACAAGAGGGTGATCCTACAGAAAGTGTTCCTGCTACGTATCACACTTCAGAGAAAGATTTACCACAGGATTTTGATCTAATGAGAAGCTTTCAAATGTACCCAGGACAAAAACCTCATGTCTGCAGTGAATGTGGCAAGGGTTTCACCCAAAGCCTTCATCTTCTAGAGCACAAGAGGCTTCACACTGGGGAGAAGCCGTACAAATGCAGCGAGTGTGGGAAGAGCTTCAGCCATAGATCCTCCCTCCTGGCTCACCAGAGAACCCACACCGGAGAGAAGCCGTACAAGTGCAGCGAGTGTGAGAAAGCCTTCGGCAGCAGCTCCACTCTCATCAAACACCTGAGGGTGCACACCGGAGAGAAACCTTACCGCTGCCGGCAGTGTGGGAAGGCCTTCAGCCAGTGTTCCACCCTCACTGTACACCAGAGGATTCACACTGGGGAAAAGCTCTATAAATGTGCCGAGTGTGACAAGGCCTTTAACTGCAGAGCAAAGCTCCACAGACATCAGAGAATCCACACAGGGGAGAAGCCATATAAATGTGCTGAGTGTGGGAAGGGCTACAGTCAGTTTCCATCCCTAGCCGAACACCAGAGACTCCATACTGGCGAGCAGCTTTGCCAGTGTTTGCAATGTGGGAGAACCTTTACACGTGTGTCTACCCTTATCGAACACCAGAGAATTCATACTGGACAGAAACCATATCAATGCAACGAATGTGGGAAGACTTTCAACCAGTATTCCTCCTTCAATGAACATCGGAAGATTCATACCGGGGAGAAACTTTACACATGTGAAGAATGTGGGAAAGCCTTTGGCTGTAAATCAAACCTTTATCGGCATCAGAGGATCCATACTGGAGAGAAACCCTATCAGTGTAACCAGTGTGGAAAGGCCTTCAGCCAGTATTCATTCCTAACTGAACACGAGCGAATCCATACTGGAGAGAAGCTCTACAAGTGTATGGAGTGTGGGAAAGCCTATAGTTACAGGTCAAACCTTTGTAGACACAAAAAAGTCCACCTTAAGGAAAGGCTGTATAAATGGAAAGAATATGGGACACCCTTTATCTATGGCTCATCCCTTACTCCATATCAGAAATTTCTGAAAGGAGACAAGCCTGAGAACTTTAATTCATCGCTGTGATCCAAGACAGCAACCAGAAGAGTAGTGAGTAGAATGCAAATCAAAATAGAGTCATCTTTTTTACTTGTACAGCAAATAGTTACCACTAGTCATGGACAGTGGATGCACAAAGAATGCTGACATCAGCAATTTAAGGACTATTACAAACAATGTTAAAAATTCGTAGAAAAAGTTTGAAAGGCCTCATTTAAAAAACAAAGCGCATGAGTAACTGTTGCATATAAGCATTGTTTCATGAGAGGGCCATCTCTTTCTAAGAGCTTCTGTGTTATGATTTTTCTTTTTAAGATAGTCTTTGATGTAGTTAATAATGTGAAGAATCGTGGGGACTCAGTCCCTAAAATGGTGAGCTGTTATAGGGAGAAGTCCTTTTCATAAGGAGCCACTACAGAGGAAAAGAATACTTTGACTTGTTGTGTATCAACAATAAAGCTCTTTATAAATTGCCCCTTATACAACATACCTGTGTGTATGTATGCATTTATATTCAGATCTACACATAAAGGACTTTTATGTATATATGGCCATGTCACCTAACAATGGGGATACAGTTAGAAAAGGCTTCATTAGGCACTTTCATGTTTATAGGAACATCATTGCATTTGCATAGCCCTAGATAGTCTGGGTCAGCCAATCAATGTGATCTCTTGAGGTGATCAACATACCATAATTTAAAAAAAAAGTTTTTTGAGGTTATAATTACAACATTTCTCCCTTCCCTTTCTCCAAACCCTCCTATACACTCCTCCCCACTCTCCTTCAAATCCATGGCCTCTTTTCTTACTAATTGTTATGCATGCATATATCCATACTTTTTTATAGTAAGGGTTTTTATTGATTGGCTTGTTTATTTTAGATAGAGTTTCACTATGTAGCCTAAGATGGCCTTGAACTCATTATGTAGAGCAGGCTGGTTTTGAACTTGCAGTCTTCCTGCATCAGCCTCCCACGTACTGGGATCAGAGGCATGAGCCATCATGCTTGGTGTAAATTTTATTAGTAGAATGTGTATACTCTAAGGATAAAAGTATAGTATAGCAAATGAGTAAGCTGGTAATGTAGTTTGTCACCATCACCATGTGTCATGTACTGTATATAATTGCGTGTGCCGTGATGTCTGGCTGCCTGCACAGAGGGTTTGTTTGCACAAATGGGCAATGCATTGTGCCTAAAGTGCTATAATAGTTAAAGAGTCACGACAGCTCTTATGTAATCGGACAAGTAGGAATTTTCCAGACCAGCTGTAGTCTGATGAGACCACTCTAACATATGTTGTCATTGGCTAAAACATCCTCATAGGCAAATGGCTGTATGCACACACTCACATATATGTACATACATGTGTGTGCCAAAGTGGATACATAACACATGCAAAGAGTTTAGGACTTTTTTTTCTCTCCATAGCCCTTAATGATTAAAAAAGACTCAGTTTACTAATTTAGAATTTACTGTTTCAAATTAAAAATTTCCCTCAGGGGCGACTTCTTTCTGACTCCCCTATATCTGTAGTGGGCTCTGGTGTAGGATCTAGCTGAATAGAGTCTTACAGTACTATAGAAGTTGGTCTGAGCAGACAGGTGGGCAGTCTGTCATCCAAACAATATATTACGTATTGTAGAAGGCCATTGTTAACAAGAGTCTCCTGCTATGAACCTGTTTGCATTTTAGAATCAGAGAAACTTTTAATTTATAACCTTTTAAGAATCGAGGTCTTCAGCTCTGATAATCTATGATAGTTATAGGTTCATTTCTATCCTCAAGGCTCAAGAACACTAATTGTTTTGTAACCTGTTCAAATATTTTTGCTAGTAATGTAATCAGTTATCTTTAGTTTCTCCTAGCTTTGGTCTTAGTAGTGGAGTTGAGAACATGCCCCCTTCCTTCTATCTCTGATTCTATACCTGCTTCTATAACTACTTAAATTCTCAAAGCCAGCGACAGCCCAGATGGAGGTATCGCTTTGGTATGTTTCCGTGTGTGGTTGCCTTTTTATTACACAGCTTTTAATATTTTTTTTCCTTGTAGTGCTGACGACTGAATCCAGGGCCTTGTGCATGCTCAGGAGGTGCTCTCCCACTGAGCTGTGTCTGCAGCCCTTAGGATTTCAGTATAAAGTTGCAGATGAATATTTTATATTAGACAATCTACTCATTACCTTAATATTTTATAACTACCCTAGACCTAGTTCCTTTTATCTTTGACTTATCCCACTGGTTTGTCACTTTAGAATTACTCCAGGAGCATTAATCAGACCCTTCTGTCTGAGCAAAATATTAGAATTAAGCAGGCATTCAGCACTTAATTGACTTCTTTTGTCTCATCAGTAGTTGTATGTGTTTAAATGTATTTGCAGGAAAAATAAGACTTGAAGGGAGCCTCTGAGTGTCTTCTTGTCCCTAGTGAGCATGCTCAGTGCCCAGTGTTTGATTCACAAATGCCATTTGCCTCCAGAGGGACTCAGGCCTCCTGGAAGAAGTGAACAGTGGCACGTTTGCAGTGAGAGGGGAAGGCAAGTGCACAGAGAGGATAGTTCTGTGTTAGGACATCATTTTAGGGTTATTGATATGAGTAGACACAGGGACTAACTTGAAGGTGCATCCTTTGATCAAACTTTAAGACACTTCAAACAAAATACTCATGACAGGGTTGGATATAATATTTTCTAAAGGTTATGGGGGGAAAAGCTTTTTATAACATTTGAAGAAAAGCATCCTTTAAATATATACAAAGCAATAACAAAAGCCTTTTAGCAACTGTCATTGTCATTAAATCTAGCAAAAAGTTGATTGATGGTAAAGCCTATTTCATGAAAGACAATTAAGGAACATTTCCTCATCCCGAGAGTACAGCTCTGAGTCGCAAGAGACACATCTGCTTTCATCCTGAGATCTGGCAGGCAGAAGTCCCCTCCTGAGCAGCAGCCACTGTAGCTTCTCATGAGGCCGCAGAAGCACATTTTACTATTTATGACATACTGCCAAAACCAGTTAGCGAGCATCTATGGAAATCTCTTCTCTAGACATACCTTTCTGCTTACAAAGAATTGAGAGTAACATGTTAGATTATATGGTAATCTAGAGTTTGAGACATTGGAGATGATAATTAAGTTGTACTTTTCAAATAGCCAATATGTTGGAACAAAAAGATGCCTGAGACAGCCACATGCAAGGTGTGATCTTTTATTGAGAAATAAAGTCAGAAAAAAAAAAAAAACCCTGTAAGACGTTTGAGGGATCTTTAGGAGAAATACAAAGGTGAGAATAGGTGTCAGATAACGTGGTATGGTTACTTTTCGTAGACGAGGTAAAAGTATTGGGTTTATATTTCCCTACCATATGCATGCAAAAGTTTAAGTTGACAAGTCATAATGTCTGCAGCTTATTTTAAATTGAAACTGATCAGTGACTGTTGAATTGTGATCACCCCTTAAACTTGTCTGTACCTATGTTTAAATGTAATAAAAATTGAGGCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044807:ENSMUST00000109135:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCCTGTGATTGGCAAGC
R:
ATGAACAAGGGTTTCTCCGGC
Band lengths:
343-1468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types