RnoINT0168094 @ rn6
Intron Retention
Gene
ENSRNOG00000029205 | Zfp354c
Description
zinc finger protein 354C [Source:RGD Symbol;Acc:69405]
Coordinates
chr10:36311343-36313952:-
Coord C1 exon
chr10:36313860-36313952
Coord A exon
chr10:36312773-36313859
Coord C2 exon
chr10:36311343-36312772
Length
1087 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
ATTCTTCCAATTGTTTTCAGATT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GGTTTCAGGCTTCCATACCTCCCGTGATTGGCAAGCTGCAGAAAGGGCAAGACCCTTGCATGGAAAGAGAAGCCCCGGAAGACACCTGCCTAG
Seq A exon
GTGAGTGAGCGGTGGGAAGTGGAGACACCGGAGTCTCCCTGAGTGTGTCGTGAAAGGGCGGTGGAACAGTGACTGGAGAGGCGTGGGGCCTCTTGTGCTAAGCGGGCTGCTTGTTGACATGCAGCCATCTAAATGCAGTGATGCACTGCGAACCCATTTTCAGTTACAGATTGAGTGAGGGAGGCTCAGCGTCTCTTAACAGGAACTCAAACTAAGTCTTTTCACGTAGAGGTAGAGCTAAACTTGGGGTTGGGGATACTCAGACCTTCAGGACAAATTGACTTCACAAACTTAGATTTTCCTAAGATTCCTACAAAGAGAATGCAGTCTTCTGGTGCCAGCGTACAGAAGAAATGAGTAAATCATTTCTCCTCTGGCCTAACAGAAAGGTGGAAAGGGATGAGAGAGAGCAAGAAAGCCTGCCATTCTTCCAGTCTGAGGAGAGAGTGGTGCGCACGGCCGGTCTTCATTGTGATTGATGTGTTGAACTTAGATGAGAACTCAGTTGTGTTTGGGCTGTTGTAATATTTAAGATGCAAACATCATCTTCTCGATAGACCATTTTCCCTCTCACAGGCTGTGATGAAATTGCAGTGGAATGTGAAGTCACACTTTTAAGAAAAACAATTAAATACTTTACAGTTGTTGACTGTGGGGTTCAGAGGATGCATGAGGGAAGGTGCAGTGAGATTGGCTGTGAGCAGAAGGAAGCAAAGGGCACTGCCTGCCCGCTGCCATGGGTGCAGCGTGGGATGCGGAAACTGAGGGATTCATGGTGCTTAGCTTCAGCTTGTCACTTCACAGCGTCCCACGCGTCCTTAAGTCCTTCCTTCCCTGTCTGGACTTCTTGTTCTTTCCAGCTGCAGCGTCCTCACCTTCAGCACTGCTTCGTCTAGTTCGTCCTTATCCCTACTCCTTAGCCTTTTACCTCTGATCAGCCTACTCTCCCTCCAGATACAGGTCCAGGTTAGGGACCAGGCTGCACCAAACCTCTTTTCTAGGTGTTGCTGCCACTCTCGTTGGCTTTCTGATGCATTGGTGTCTCTTTTCTAGCAAAGGAAGAATTAATTCTTCCAATTGTTTTCAG
Seq C2 exon
ATTTCCAGATTCAGTCGGAGATAGAAGCGTCGTCCCCTGAACAAGACGTTTTTATTGAAGGACCATCTCGTGGGCTGCTAAAGAACAGATCTACTAAGTGTGCTTACTGGAAAATCAGCTTTGGAGAGCTTGTGAAATATGAGAGGCTAGAGACAGCACAGGAGCAAGAAAAGAAAGCTCACGAGCCAGGGGCAGCTTCCCCCAAGGAAGTCACCAGTGAAGATGGAATTCCCACAGACCCTGAGCTCGAGAAGCCCTTGTTCATGAATAAAGCACTAGTTTCACAAGAGACCGATCCCATAGAAAGGGTCCCTGGTATGTATCACACTTCAGAGAAAGATTTACCACAGGATTTTGATTTAATGAGAAACTTTCAGATTTATCCGGGACAAAAACCTTATGTCTGCAGTGAATGTGGGAAGGGTTTTAGCCAAAGTCTTCATCTTCTAGAGCACAAGAGGATTCACACTGGGGAGAAACCTTACAAATGCAGTGAGTGTGGCAAAAGCTTCAGCCATAGATCTTCCCTCCTGGCTCACCAGAGAACCCACACCGGAGAGAAGCCGTACAAATGTAGTGAGTGTGAGAAAGCCTTCGGCAGCAGCTCCACACTCATCAAACACCTGAGGGTGCACACCGGAGAGAAACCTTACCGCTGCCGGGAATGTGGGAAGGCCTTCAGCCAGTGTTCAACCCTCACTGTGCACCAGAGGATTCACACTGGGGAAAAGCTCTACAAATGTGCTGAGTGTGACAAAGCCTTCAACTGCAGAGCAAAGCTCCACAGACATCAGAGGATCCACACGGGTGAGAAACCTTATAAATGTGCTGAGTGTGGGAAAGGATACAGCCAGTTCCCATCCCTGGCTGAGCATCAGAGACTCCATACTGGAGAACAGCTTTGCCAGTGCTTACAGTGTGGGAGAACCTTTACACGTGTGTCTACCCTTATCGAACACCAGAGAATTCATACTGGACAGAAACCATATCAATGCAACGAATGTGGGAAGACCTTCAACCAGTATTCCTCCTTCAACGAACATCGGAAGATTCACACTGGGGAGAAACTTTACACATGTGAAGAATGTGGGAAAGCCTTTGGCTGTAAATCAAACCTTTATCGGCATCAGAGGATCCATACTGGTGAGAAACCCTATCAGTGTAATCAGTGTGGCAAGGCCTTCAGCCAGTATTCATTCCTAACGGAACACGAGCGAATCCATACTGGAGAGAAGCTCTACAAGTGTATGGAGTGTGGGAAAGCCTATAGTTACAGGTCAAACCTCTGTAGACACAAGAAAGTCCACCTGAAAGAAAGGCTCTATAAATGGAAAGAATACGGCACACCTTTCATCTACGGCTCATCCCTCGCTCCACATCAGAGGTGTCTGAAGGGGGAGAAGCCTGAGGACCTTAATTCATCCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029205:ENSRNOT00000000248:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCATGGAAAGAGAAGCCCC
R:
ACCAGGGACCCTTTCTATGGG
Band lengths:
355-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]