BtaINT0165485 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006954 | ZNF432
Description
Bos taurus zinc finger protein 432 (ZNF432), mRNA. [Source:RefSeq mRNA;Acc:NM_001192232]
Coordinates
chr18:58151318-58153183:+
Coord C1 exon
chr18:58151318-58151332
Coord A exon
chr18:58151333-58153047
Coord C2 exon
chr18:58153048-58153183
Length
1715 bp
Sequences
Splice sites
5' ss Seq
CAGGTTACT
5' ss Score
0.49
3' ss Seq
CCAGGAATCTATTACTCCAGGAA
3' ss Score
3.28
Exon sequences
Seq C1 exon
ATGATCCAGGCGCAG
Seq A exon
GTTACTCATGTCTTATTTTATTCTCTCCTTTATTCCTTAATGGATTTGTAGAGCCTGTAAAAAAAAAAAAAAAATCCAGTTCAGTAGAGAGAAATAAACTGAATCTAACCCCAACACCATGGCAAAGTGCGATTAAGAATGTAGTGTTTATGTGATTCCTATGAAACTATAGTGTTAGAACATCATGTGTATCTGTCACTGACTCTGTGTGCGCACCTGCAGATGTGTGTCTATTTACAAATGTATGTGGGTTCATGCACATATCTGTGTACACATCTGTTAGGACGTTTTGTGCAAAAAATTACACTCTTAAAGAACATCCTATTGCCCTAAGATGATATAATTTAAACATCCAAATGAATAACGACTGCAATTGTTCAGTGAATATTAGCTGTATAAAATTCCATTTGTCTATGTGCTGTACTGTTCTTAGTCACTCAGTTGTGTCTGACTCTATGTGACTCCATGGGCTTTAACCTGCCAAGTTCCTCTGTCCATGGAATTCTCTAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGGATCTTCCCCACCCAGGGATTGAACCCACGTCTCCTGTGTCTCCTGCATTGCAGACAGATTCTTTACCCACTGAGCCATTTGTCTATAGTCATACTCAAAAAAACTGTGTTAAACTATGTAAAGCATTTAGAGGAGTGCCTGCCACGTGGTAAGGGCTGTATGAGGTCATCCATGCCTTTAGTCTTTGACAGCACTTAATACTAGGATATTATCAAATTGTATGATTTTCAGTAATCAATTTTTTTTTTTTGGCCATATTTTGCATTTACCTCATCACAGATGAGGTTGAAATCGGTCTTGTATATTAATTGATCAGCTGCATTTTTTCTCTTGAGAAATGTCTGTCCTTATCATTTTTACATTAACAAGATTATCTTTTTCTTCTGATTAATGAATCATTCCTATGTACTATATATTGATTCTTTCTCTTTTATTTTAACCTCGCAACGTGGCATGTGGGACCTTATTTCCTTGACCAGAGATTGAACATGCACTCCCTGCAGTGGAAGCATGGATTCTTAAGCACTGGACTCCTGGGGAAGTCCTCTTTGTTTATAAAAAATATTTTCCTGGCTTGTCACTTTTCTTTCAGCTTTGCTCATGATATCTTCTTTAAAATCTTTTTTAAATTGAAGTATAGTTGATTTACAATGTTATGTTAATTTCTGCTGTATACCAAAGTGATTCTGTTATACATGTATATACATTCTTTTTTCATACGATTTTCTGTTATGGCTTGTCACAGTATATTCTCTGTGCAGAACATTAGAACTTTATTTATCCATTCTATATATATAATAGTTTGCATCTGCTAATCCCAAACTCCCAACCCATTTCTCCTCCAACTCCCACTTTGGCAACCATAAGTCTATTCTCTGTGTGAGTCTGTCTCTATTTTGTAACTAGGTTCCTTTGTGTCATATTTTAGACATGGGACTGAGCCTTTACCGTATGCTACATGGTGCTCTCTTCAGGTTGATTGTGTCAGAATTGAATGGTAGGACACACAGCTGGTGTCAGACAGTTGCTTGGTGGTGTGTTTAAAACAAACATGAAAATTGGTGTCAAAATCGTACTTAATATGAACAGGACAGCTTCCTTTATATTCTTTATGAATGAATTGAAGAGAAACACTCATATTAAACCAGGAATCTATTACTCCAG
Seq C2 exon
GAAATCTTGTCATTCAAGGATGTGGCTGTGGACTTCACATGGGAAGAGTGGCAGCTCCTGACCCCTGCTCAGAAGACCCTGTACCGGGATGTGATGCTGGAGAACTATAGCAACCTGGTGTCCGTGGGTGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006954:ENSBTAT00000031814:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development