BtaINT0165487 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006954 | ZNF432
Description
Bos taurus zinc finger protein 432 (ZNF432), mRNA. [Source:RefSeq mRNA;Acc:NM_001192232]
Coordinates
chr18:58155146-58157607:+
Coord C1 exon
chr18:58155146-58155232
Coord A exon
chr18:58155233-58155877
Coord C2 exon
chr18:58155878-58157607
Length
645 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTATTCTCTTCTTTCCTAGAAA
3' ss Score
8.82
Exon sequences
Seq C1 exon
TCAGCAAATCAGATGTGCTGTTCAAGTTGGAACAAGGGGAAGAACGATGGATGACAGAAGATGAAATACACAGTCATACCTGGCCAG
Seq A exon
GTGAGTGAGAAATGGTTGGTAATTGCAGATGTCCTGAGCTAGACAGGGAGAAGAGGCTGGGGAGTGTCTGAAAATGCAGAAATTGTGCCTCTGCATAGCTCTTCCCATAAAAGAACTTTTAGGCCTTGAGAGGGAAATATACCCGTTTTTGCTTCTGAGATCTGATCCTTGATTTTATTTTACATCTTGATTTTTGTTTGCCTTGTTTTTGCCTTCCTTGGATTTTATAACTCCTTTGAACCCTGTCACAAATCTGTTTCACTTCTCTGGCTGTGGAATTCCACCTTCCAGGCCTCAGCTCAAGAAGAAATCTTTGTGTTTTTTTTTGTTTGTTTTTTTAAATTTTTGGCCACACTTTAAATTTTTTTTTTTTTTTTTTTAAATTTTGGCATGTGGGATCAAACCCATGTGCCCTACAGTGGAAGTACAGAGTCTTGACCACTGGCCCACCAGGGAAGTCCCTGTATTACTTTGGTTTTACCAATGTGTAAGAAATAAGGAACATTTATACAGGGAGTGTTTGTTTCATACTGTTGTTATAAGGTTGCCACTAAAGTACCATTTTTAAAAAAACACCAAGGAATTTTTTAACCAATTTTATTCCAAACAGGAATAAAAAGGATTCATTATTCTCTTCTTTCCTAG
Seq C2 exon
AAACTGGCAACATTGGTAATCATCTGCAGGTTGACTGGGAAAATAAAAAAATGCTGAAAGGTATTGAACAATACCAGGAACGTAATACATTTGGAAATCCTGTTCTTCAAAGCCAAAGTTATTTCTGTTTCAGGCAAAATCATGATATGTTTGAGTTCTATATAAAAACTTTGAAGACAAATTCAAGTTTAGTCATTCAGAGCCAAAGCTATGAAATTAAAAACTCTGCTAAATGTAATGGAGATGGGAAATCATTTCTGTTTGGTAAACATGAAAAATGTCATTCTCCAGTTAAATGCCCTGTAAGTGCAAAACCCATCAGCACTAAGTCCCAAGTCATTAAGCACCAAATAACTCACAACATAGAGAAAGCCCATATATGCAGTGAATGTGGGAAAGCCTTTGTTAAGAAGTCTCAGCTCACTGATCATCAGAGAGTTCATACAGGAGAGAAACCTTATGGATGCAATCTGTGTGCAAAAGTATTCTCCCGGAAGTCCAGGCTCAATGAACATCAGAGAATTCATGAGAGAGAGAAATCTTTTATATGCAGTGATTGTGGAAAAGTCTTCATCACGAAGAGCCGTCTGATTGAACACCAGCGAACTCACACAGGAGAGAAACCTTATGTATGCAGTGACTGTGGAAAAGGCTTCCCAGGGAAGCGTAATCTCATCTTACATCAGCGAAATCATACTGGAGAGAAATCCTATGTATGTAGTGAATGTGGAAAAGGCTTCACTGCAAAGAGCATGCTCACTATACACCAGCGAACTCACACCGGAGAGAAACCATACATCTGCAGTGAATGTGGGAAAGGCTTTACCACAAAGCACTATGTCATCATCCACCAACGGAATCATACAGGAGAGAAACCCTACATATGCAATGAATGTGGGAAAGGTTTCATTATGAAGAGCCGTCTGACCGAACATCAGCGAATTCATACAGGAGAGAAGCCGTATATGTGCAATGAATGTGGAAAAGGCTTTTCCAGGAAGGGTAATCTGATTGTACATCAGAAGACTCATACAGTAGAGAAATCCTATGTATGTAGTGAATGTGGAAAAGGCTTCACCTTGAAGAGCATGCTTACCGTACATCAACGAACTCACACTGGAGAGAAACCCTACATCTGCAGTGAGTGTGGGAAAGGCTTCCCATTAAAGAGTCGGCTGGTCGTGCATCAGCGAACACATACTGGTGAAAAACCTTACCGATGCAGTGAATGTGGGAAAGGCTTCGTTGTGAACAGTGCACTAATGATACATCAGCGAACTCACACTGGAGAGAAACCCTATACATGCAATGAATGTGGAAAAGAGTTTGCCTTTAAGAGCAATCTTGTGGTACATCAGCGAACTCATACTGGAGAGAAACCCTTTACATGCAGTGAGTGTGGAAAAGGTTTCACCATGAAACGCTATCTCATTGTACATCAACAAATTCATATGGGAGAGAAGTCTTATATATGCAGTGAATGTGGAAAAGGTTTTGTCATGGAAACAGAGCTCATTTTACATCAGCAGATTCATACTGGAGAGAAACCTTATGCCTGCAGTGAATGTGGCAAAGGCTTCTTTGTGAAAAGCCGTCTAGTGGTTCATCAGCGGACTCATACAGGAGAGAAACCTTTTGTATGCAGTGATTGTGGAAAAGGCTTCTCCTCAAAAAGGAATCTCCTTGTACATCAGAGAACTCATAATGGAAACAAACCATTAAAGCGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006954:ENSBTAT00000031814:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACAGTCATACCTGGCCAG
R:
TGGGACTTAGTGCTGATGGGT
Band lengths:
355-1000
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development