HsaINT0187226 @ hg38
Intron Retention
Gene
ENSG00000256087 | ZNF432
Description
zinc finger protein 432 [Source:HGNC Symbol;Acc:HGNC:20810]
Coordinates
chr19:52033420-52040583:-
Coord C1 exon
chr19:52040488-52040583
Coord A exon
chr19:52035441-52040487
Coord C2 exon
chr19:52033420-52035440
Length
5047 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ATTGTTCTCTTCTTTCCTAGAAA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTTATCAAGTCAGCAAACCAGATGCACTCTCCAAGTTGGAACGAGGAGAAGAACCATGGACAATGGAAGATGAAAGGCACAGTCGAATCTGTCCAG
Seq A exon
GTATGTGAGAAGCAGCAAGATGCGTAAGTAATATTATAGTCAGTGAAAGAAGGCTCTGTGGGTGTCTGAGGACACAGAAGCAGTGCCTACATTAGGAATGGGAATCGTTTTCCCTCCACAAGAAACCCTTCCCATCTTATTTTAAGGTTGCATTCTCCTTTAGTACCATACATCTGTCCTGTCTGTGCTGGTGTTGTATTGAATGTCCTCTACCTATGGAGTTCTCTTCTTAAAAGTCTCTACTATTTTTGTTTACTGTTTACCTAGAAAGGACTGTTTTATGTCCTACATCAGTTCTAGACCAAACCAGGTCATAACTTATGTCTGTCTCAGAGTACTTCCTTTGTACATTTGATTTCTACTTTTCCTTTAGTTCATCTTAGACGGTAGCATTGTATTCATTTCCCTAATGTGTTTTTCCCATTATAGATTTGTTTTTTCAACAGCTTAGATAATTTACATACCATACAATTTTCCAATTTAAAGTTTATTTTTCAGTGCTTTGTAGTGTATGAACAGTTATGTAACCATCACCATAGTCAATTTTGGAAGATTTTCAAAGTATCACTTAAAAAAAAAAATTGTTTCCAAGCCCCCAGCCCTAGGCAATCACTAATCTACTTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGGCTCCCAAGTAGCTGGGATTACAGGCGCGCACCATCATGCCCAGCTAATTTGTGTTTTTGTAGAGACAGGGTTTCACCATGTTGGCCAGTTTGGTCTCGTACTCCTGACCTCGTGACCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCTCTACTTTTTATCCCTATAGATTTGCCTGTTCTGGACATTTTATATAAATAGAATCATGAAATATATGGTCTTTTGTGTCCGGCTTCTTTCATTTAGCATAATGTTTTTGAAATTCTTCCATTCTTTAGCATGTATCAGTGCTTAATTTCTTTTTATTGTTGAATAATATTCCATTGTATGGATATACCACATTTTATTTATCAATTCATCTATTGCATTGACATTTGGGTTATTTCTACTTTTTGGCTTTTATGAATCATGCTGCTATGAACGTTCATGTACAACTTTTTTAGGAACGTATGTTTTCATTTTTCTTGAGCCTTCACCTAGGAGTAGAATTGCCAGGTCATTTGTAGTCCAGGAGGGGGTCCAAGTACAGTACTTCTCTGGTCCTCCTCTCACTGTGGATGTTACATCTCTTCCCAGCCACACAGTGTGTGACAGTACAGAGTATTGACAACTAGGGAAGTTCACTTGAGCCTTTGGTGGCCAGAGTTTTGATTAGGTTTCAGTCACATACAGCCCACATGGCTGACTTTTAGTCTTCAGCCTCTCCTGGAAGTCAGGCTAATACCTAGAGTGTCCAGTTTTTCCAAAGGCTGGAAGTGATATGGCATGGGCCAAAGCCCCTATCACAAATCATATTGTTAAACTGTCCAGTGGCTAAAGCCACCAGGCAAACAAAGACACTCCTATGGGCCAGGACATTCCAGGGGCCTAGAGATCATTTCCTAATAGCTAAGAACAAATGCTAGATCTCTGTTTGGATGAGGTTAGAGCTAGATCCTCACTACACAGAAGATTACCATAAAAATTAACAATAAAGGGGTTAATTAAGGAATACAGAGAACATAGAGCATATGGCAGGATAGTCAGAATTGCAGCAAGAGTATGATGTGCACAAGGCATATCTAGATTTTGAATTAGGAAGATGGTGACATGAATTAAGAATGAAGGCATGGGTCAGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCTAGGTGGGGGGAACACCTGAGGTCGGGAGTTTGAGACCAGCCTCACCAACATGGAGAATCCCCTTCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGCACATGCCTGTAATCCCAGCTACTCAGGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGTGGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCACAACTCCATCTCAAAAAAAAGAATGAAGGCATGAAATAGGAATTGTGCAAGGCCATGGGCCTGACTATCAAAAGATTGGCTTCAAGTTGGCCAAATACAGGTCAGTGATAGAAGCTGCTTGTTGGAGAAATCGTGGAGCAGAAACATGGTAATATTCATGGTAATGTAAACTTTTTTTTATCAAGATGACTTTTGATTGTATATATGAGTAATTGAGGTAGCATGGTTGAGGGTTGGTTAATTTTATATTTTTGTCTTTTCATAAAATATGTTGCTAGTCTTGACCTTTCACTTGGATGACAGCAGTGTAGCAATAATAAGAAACAGCTAAATATCTTAAGAAAAACTGAAGGTGAAGATGCCACAACCTTTGTCTAGAAGAAGTTTATCCTTTAGTACAACTTAACTGATGCTGAGACATAAATGTAGCTTACTGAAGTAGATGTTATTGGTGGCAGATGAGGAAACAGTGTATCAGGGACATTGAAATGGGAAAAATTGGATATGACCTTTTTTTTTTTTTTTTTTTAAGGTAGAGTCTCACTTTGTTGCTCAGGCTGGAGTGCAGTGGCACGATTTTGGCTCACTGCAGCCTCAACCTCCTGGGCTCAAGCGATCCTCCCACCTCAACATCCCAAGTAGCTGAAACTACAGGCGCATATCACCATGCATGCCTGGCTAATTTTTGTATTTTGTGTTTCACCATGTTGCCCAGGCTGGTCTGGAACTCCAGAGCTCAAGTGATCTGCCCACCTTGACCTCCTAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCTTGATACGACTTTTCTACTGCATGCAGAATGTGATTGAAGAAAATGACAGTTTTCATATCCCATGCAGCAGCACATTTTCTTCTGAAGGCAACTACATGGTACACTGGCCAGTTGCAAAATTCCCTATCATTGTTTTCCTGTTTCATAATTAATGAAACATATGATAACGCAACACAGCTAAACCAAAGGGTGGAGTGTTGACTATAGGAGTTGTTCATTAAACGTGATGGATGTTTTTGGAAAGTTAGATGGTAGTCTACAGATTGAAGAGGGGCAAATTTAGTAACAATTACCACACAAGAGTCTATCTCAGTTGACTTAATTTCAACAGATGGAGATTTCCAATTCTTACTTGCCAGGCAACATGTACGTGAATGTATTTATTCTATATATCTCAGTAAGCATATTACCCTGATCTTTGTATTCACAGTTTGGTTCCTCTAACAGGGCTTAAATAATCCCAAAACCACATGTTGGAATGTCTACAACCTTGGTTCTGTACCTTCATCTTTCATTCTACATGTCTTCTCAACATGGTATCCTGGCTCAGTGCCTTGGCTCACACCTATAGTCCCAGCACTTTGGGAAGCAGAGGTGGGCAGATCACTTGAGCCCAAGAGTTCAAGACCAGCTTGGGCAATATGGCAAGACTCCATCTCTACAAACAATACAAAAATCAATCAGGCATGGTTGCATGTGCCTGTAGTCCCGGCTACTCAGGAGGCTGAGGTGGGAGAATTGCTTGAGCCTGGGAGGTGGAGGTTGCAGTGATGCAAGATTGTGCCACTGCATGCCAGCCTGGGTGACAGTGAGACCCTGTCTCAAAAAAAAAAAAGTCATTCAGTCCTTTTTTCTCAAATAATATGTATGTACTGATTATTTCCATGCTGCCTTCTCCATTTATACCTCCAACCAGATTCTTGATGTCTGTGTTACATATTTGATAACCATTTCAAAGTGTGTTTCACAGTATATACTTTACATGTGCTGGACTGCAGTAATATTTGCCATCTCATTATCAGATGCTGTCATCTACCCAGTGGCTCAAGCCATATAGTTAGTAATCTTTGAGCCCTCACTTTCCTCACTCTCCCCATTGAATTCATCATTTAACCTTGTCTTTTCTTTATACAAAAATATCCTGCTTTTCTCCAACTCTCATCATCTACACTGCTCCATCAAACCACACTTAACATCACCAACTCCCTTCTTTTTTTGTTCCTTCGTATTGTTTTTCCTAATTAGAATTCAGCATGAGTGAAAAGAAGGCATATTTTGTGTATCCCAAATGCCAGCAGAGTGCCTTGTCCATAGGAGTCATTTGACAAATAACTAGTGGAGTGAATAAATACAACCCTCAGAATTGTGAATCAGTTGCCTTTTCCACCTTTGTGGTCTGGTGTCTCCCAAAATTTTGTGGAATGGTGTTCCTCCAAGCCCTGTTGTTTGCTTGTAATAATGACTTGCTTGTATTTTACTGTGTCCGCATGTTTTGCAAGGTCCTGTTTAGAAAGCTGTCAAATCGATATAGATTGTCAACTGCCTCACCTTATTTGCACACAGACTGCTTTTACTTTTTGGTTTGTTTATATTATTATGTTTTTACCAAAGTGTATACATGAAGTTGCTTTTATACTATTATTGTAGTATTGTCATTAAATAGCGATATTTAAAAACACCTGGCCAGGTGTGGTAGCTCATGCCTGTAATCCCAGCATTTTGAGAGGCCGACGTAGGGGTATCACTGGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATATTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTAGGCATGATGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGGTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATCATACCACTGCACTCCAGCCTGGGTAACAGAGCGAGACTCTGTCTCAAAAAATAATAATAATAAACAAAATAAAACACCAAGGATTTTTTTTTCTAAGAAGACAGTTTTATCCCCAACAAGATTATAAAAGGATTCATTGTTCTCTTCTTTCCTAG
Seq C2 exon
AAAACAACGAAGTTGATGATCATCTGCAGGATCACTTGGAAAATCAAAGGATGCTGAAGAGTGTGGAACAATACCATGAACATAATGCATTTGGAAATACTGCCTCTCAAACCAAAAGCCTTTGTCTTTTCAGGGAAAATCATGATACATTTGAGTTATATATAAAAACTTTGAAATCAAATTTAAGTTTAGTCAACCAGAACAAAAGCTGTGAAATTAACAACTCTACTAAATTTAGTGGAGATGGGAAATCATTTCTTCATGGTAACTATGAAGAACTTTATTCTGCAGCTAAATTCTCTGTAAGTACAAAAGCCAATAGCACTAAATCCCAAGTCAGTAAGCATCAGAGAACTCATGAAATAGAAAAAAACCACGTATGCAGTGAATGTGGGAAAGCGTTTGTCAAGAAGTCTCAGCTCACTGATCATGAGAGAGTTCATACAGGAGAAAAACCTTATGGATGTACTTTGTGTGCAAAAGTGTTCTCCAGAAAGTCCAGGCTAAATGAACATCAAAGAATTCATAAAAGAGAGAAATCTTTTATATGCAGTGAATGTGGAAAAGTCTTCACTATGAAGAGCCGTCTGATTGAACATCAGCGAACTCATACTGGAGAGAAACCCTACATATGCAATGAATGTGGAAAAGGCTTCCCAGGCAAGCGTAATCTCATTGTACATCAGCGAAATCATACTGGAGAGAAATCCTATATATGTAGTGAATGTGGAAAAGGCTTCACTGGGAAGAGCATGCTTATTATACATCAGCGAACTCATACAGGAGAGAAGCCCTACATCTGTAGTGAATGTGGGAAAGGCTTCACCACAAAACACTATGTCATCATACATCAACGAAATCATACAGGAGAGAAACCATATATATGCAATGAATGTGGGAAAGGCTTCACCATGAAGAGCCGTATGATCGAACATCAACGAACTCATACAGGAGAGAAACCCTACATATGCAGTGAATGTGGAAAAGGCTTTCCCAGGAAGAGTAATCTTATTGTACATCAGAGAAATCATACAGTAGAGAAGTCATATCTATGTAGTGAATGTGGAAAAGGTTTTACTGTGAAAAGCATGCTCATCATACATCAGCGAACTCATACAGGAGAGAAGCCCTACACATGCAGTGAATGTGGGAAAGGCTTCCCCTTGAAGAGTCGGCTGATTGTACATCAGCGAACTCATACTGGAGAGAAACCTTACAGGTGCAGTGAATGTGGGAAAGGTTTCATTGTGAATAGCGGACTGATGTTACATCAGCGAACTCATACTGGAGAGAAACCGTACATATGCAATGAATGTGGAAAAGGTTTTGCCTTTAAGAGCAATCTTGTTGTACACCAGCGAACTCATACTGGAGAGAAACCCTTTATGTGCAGTGAATGTGGAAAAGGCTTCACCATGAAACGCTATCTCATTGTACATCAGCAAATTCATACAGAAGAGAAATCTTGTATATGTAGTGAATGTGGAAGAGGCTTTGCCAAGGAAACAGAGCTTGCTTTACATAAGCAAGTTCATACTGGAGAAAAACCTTATGGATGTAATGAATGTGGTAAAGGCTTCACTATGAAGAGCCGTCTAATTGTTCATCAACGAACTCATACAGGAGAGAAACCCTTTGTATGCAGTGAATGTAGAAAAGCCTTCTCCTCAAAGAGAAATCTCATTGTACATCAGCGAACTCATAATGGAAACAAACCCTGACAATGCAGTGGACATGTTCATGCCTTTGGGAAGAAAATCTGCCTTGTACAACATCAGAGATTTCACAGTATAGATTTTCTACATGTGTACTGAGTATGAAAAATCATATTTCAAAATCCAGTGTTATTCACTAGGATGAATGCTATCAATGTCAGAAAGGCTTCAACATGAATTCAGGCTCTGAATTCTTTGATGTACCAATGTATAGAAAATTACTCATCTGAGAGAGAGTCTGTGGATTGGGGGTAACCTTTCATTTGTCAACCTTCATTAAAACTATGACAACGTCCACATGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256087:ENST00000221315:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains