BtaINT0165511 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038534 | ZNF446
Description
zinc finger protein 446 [Source:HGNC Symbol;Acc:HGNC:21036]
Coordinates
chr18:65908013-65908617:+
Coord C1 exon
chr18:65908013-65908214
Coord A exon
chr18:65908215-65908522
Coord C2 exon
chr18:65908523-65908617
Length
308 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTGCCTGCCTGGCTTCCTAGCAT
3' ss Score
6.04
Exon sequences
Seq C1 exon
ATTACAGCACATGTCCTACAGCAAGCTGTGCTCCCAGCCACGCAGAAGACAGAGGAGTTGGTGGGGGGTGTCCACCCCTCAGGGACAGTGGAGCCCCTCAGGGCAGCCTCTGGGGAGGGGCCAAAGGATGCCCAGATGGAGGGCAATGCCCAGCTCAGCTGCAGCGTGAAGGAGGAGCCTGATGGCTACATGCAGGAGATAG
Seq A exon
GTGAGGTGCGGGTGCACGAGGGCTGGGGCCCCTTGAGAGTCAAGGTGGGGGAGTCCAGGAGAGGTTGTGCAGAGACTGGGGGCTCCTGGAGTGGGTCTGGCGTCTCCAGCTGGGAGGCGGGCCCCACAGGGACTGGGCCCCCCAGAGGCTGGAGGGAAGGGCTGGCTGCCCACCTGCCGTGTGCCTGGCACACAAAGAGCACACCTCCTGTTGCCAGAGGAGGGCCCAGGCTACAGCACCAATGCCAGCTCCTTGCCTGCACTGGCTCGCAGGGACAGTCCCTGACCCCTGCCTGCCTGGCTTCCTAG
Seq C2 exon
CATCCTCCAGCCCCCCACCTCCAGCCCAGTCCCACAAGGAGCACGTCGAACAACAGGAACCGACCTCCGCACCCTTCCAGCCACCCCGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038534:ENSBTAT00000056703:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.779 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(6.5=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACATGTCCTACAGCAA
R:
GGGGTGGCTGGAAGGGTG
Band lengths:
286-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development