MmuINT0179266 @ mm10
Intron Retention
Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:12979451-12979979:+
Coord C1 exon
chr7:12979451-12979646
Coord A exon
chr7:12979647-12979884
Coord C2 exon
chr7:12979885-12979979
Length
238 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CAACTGCCTCTCTTCCTCAGTAT
3' ss Score
7.19
Exon sequences
Seq C1 exon
ATCACAGCCCACATCCTGAAGCCAAAGATGCTTCCTCTAGTCCAGAAGGAGTCCTCAGGGAGTCACCACATCTCAGCAGCAACGGAGTCCTCCAAGGCAGGCCTTGCGGAGGCACCGCTGAAGGCCGGGATAGATCGATCTACCCAGATCAGTTGCAGTGTGAAGGAGGAAGTCAGTGCTGATGGGCAGGAGATGG
Seq A exon
GTGAGGGAATGCAACATGTGAACTTCAAATCCCTGGGGTGGGGATGGGGGTAGGGGTGAGGTCAGAGCACGGTGTCAGGGCTGCAGCTCCTAAACTGAGTCTGACAATCCCAGCTGAGATAGGGACTCTGGAGAGACCATAAAGCTGGATCCCTGAGAAGAATGGGGTCACTTCCCCCATGTCACATGGCAGAGGCAGGCCAAAGGTCAATGCAGTGACAACTGCCTCTCTTCCTCAG
Seq C2 exon
TATCTCCAAGTGCCCTCCTTTCAACCCAGGATTCCGAGGGACATCTTGAACATCAGGAAACGGTCTCCATATCCTTCCAAACAGGAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961:ENSMUST00000045810:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(23.7=28.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAGCCCACATCCTGAAG
R:
TTGGAAGGATATGGAGACCGT
Band lengths:
276-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types