BtaINT0165516 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018090 | ZNF449
Description
zinc finger protein 449 [Source:HGNC Symbol;Acc:HGNC:21039]
Coordinates
chrX:18912542-18917414:+
Coord C1 exon
chrX:18912542-18912746
Coord A exon
chrX:18912747-18917300
Coord C2 exon
chrX:18917301-18917414
Length
4554 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CTCATCTTTCTTCTGGCAAGGAT
3' ss Score
4.79
Exon sequences
Seq C1 exon
CTCGATAGGCAAGAAATGCTCTTGGAAGAACTGGCACCAGTGGGAATGGCACACATACCACCAAACATCCACCTGGAGTCACCCCCACTCCAAGTAATGGGACCTGCCCCAGAAGTCCCAGTGGCAGAGGCATGGATCCCACAAGCCGGGCCACAGGAGCTGAGCTTCAGTGCTGCTGGGGAAGGCCAGCCCTTTCTCGACCCTG
Seq A exon
GTAAGGCAAGGGTTTGCTTTCCTTTCTTTGGTTTCTGTTTTGAGAGCTCAAGAGCTCTCTAGGGTTGGGGAATGCCTGATGGAAATGGGCCACTCTGATCAAGAGTAGAAGGAGGAAATATCTCTCTGGGAATAGCTGGTCACAAAGCACCTTAGATCGAGTGGGATTGAAAATCCCTTAAGCTAATGACCCTGCTCAGGAAGCCTATTTTTCTCTTTTCAATTTTGTTTTTATCATGATAAAATACAACCTAAGATTTACAACCTCAACCATTTTTATGTGTACAGGTCAGAGGTATTAAATACATTTGTAATTTTGTGGAGCTATTCCAACATCCATCTCCGTAACTTTTTATCTTGTAAAATTGAAACTCTATACCCATTTATACAACTTCTCATTTCTACATTCCACACCCTGCCCCCCACCCCATCACCAGCTCCTGGTTACCACCATTCAACTTTCTGTTTTAATGAATTTGACTACTCTGTGTACCTCATGTAAAATAATGCAGTGCTTGTCTTTTCGTGACTGGCTTATTTCACTTAGCACAATGTGCTCAGGGTTCATTCATGTTGTAGCATATATCAGAATTTCCATCCCTTTAAAGGCTGAATAATAATCCCTTGTATGTATATATCACATTTAGCGTATCCATTTTCCATAAATGTGTACTTGGGTTGCTTCTATATTTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCTGACTCTTTGCGACTTCATGGACTGCAGCACACCAGGCTTCCTGTCCTTCACCATCTTTCAGAACTTGCTCAAACTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATTCTCTTTTGCTCCCTTCTTCTCCTGCCTTCAATCTTTTCCAGTATCAGGGTTTTTCTAATGAGTCAGCTCTTCACATCAGGTGGCCAAAGTATTGGAGCATCAGCTTCAGCATCAGTCTTTCCAATGAATAGTCAGGATTGATTTCCTTTAGGAGTGACTGGTTTGATCTCTTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTACACCACAGTTCAAAATCATCAGTTCTTTGGTGCTCAGCTTTCTTTATGGTCCAACTCTCACATCCATACATGACTCCTGAAAAAACCATAGCTCTGACTATATGGGCCTTTGTTGGCAAAGTAATGTCTGCTTTTTAAGATGCTGTCTAGGTTTGTCATAGCTTTTCTTCCAAGGAGCACGTGTCTTTTAATTTCATGGCTGTAGTCACTAGACAATGGGAACTCAGGTCAGAAGGGTGGGGGACAGGTCAAGGGGAATGGTTAGTGGCCTCCACTGACATGGGCTTTGAGCATAGGTTGGGGAATACAAACTGGTGATAGTGTCAGAAGCAGGGCTCTGAGAGTCCAGGAGGAGGAGACTGACTGCACCAGAGGCATAAGGATCTGTGTGTTATGCAAGATAATGGAGGTGGGTAGGGGTGGAGTTGCTATATAATTAAAAATTGCATGAAGTTAACATTCAGGAAGAAGCTCAAGTTTGAGCGCACATTTCCTGTCTGCATCCAGGGTATGGTGTAAGGTGTAAAGTTAGGTTATTGAGATTTTTCTTCCTTTTTAATATAGGCATTCAAAGCTATAAATTTCCCTCTAACTAAGCACTGGTTTTACCTCCCAAAGTTTTCATTTTCATTTACCTCAGAGTATTTCTAATTTCCCTTTTGATTTCTTCTTTGACTGATGGGTTACTTAGGAATGTGTTGTTCAATTTCTTTATATTTGTGACATTCCCAATTTTCTTTCTGTTACTTATTTATAATGTCATTTTAGTGGGGGAATGTACTTTGTAATTGTGATCCTTTAACATTTTTGAACATTTGTTTTATGGTATAGCATCTCGACTGTCCTGTAGAATTTTCTCTGAACCTAAGAAGCATGTATATTCTGGTGTTGTTCGCTGTGGAGTGTTATCTGTAAATGTCTGTGATGTTTAGCTGGTCTCTGGTATTTTTAAGTCTTTTATTGTTGATATTCTGCCTAAATTTTCTATCTAGTAGTGCAAAGAGGTGTTGAAGTCCACAACTATTGTTATCAATTGTCTATTTCTTTTTACATTTTTTTCTTCATATATTTTTCACTGTGTTATTTAAGTGCACATATGTTTATAATTGTTACATCTTCCTAGTGGATTGATCCTGTTATCATTATGAAGTGATTCTCTTGTTCTACTATCTATTTTGTCTGATATTAATATAGTCATTCTGGCTGTCTTATGGTTGCTTGCTGCTTGCATGACATATCTTCTTCTGTTCGTTTACATTCAGTCTGTTTGTATCTTTGAATCTGAAGTGTGTTTCCTTGGACAGCATATAGTTGGATTTTTAAAAATCCAGTCTGATGATCTCTGCCTTTTGATTGAGTTGTTTAATTCATACCATTTAATCTTATCTTTGATATGGTTGGATTTATATCTGCTATTTTAGTTTTCATTTTTGGATAGGTCTCATATCTTTTTTGTCCCTCTATCTGTCATCTACTGCTTTCTTTGACACCAAGTAAATATTTTAAATGTAACATTTTACTGACTTTAATGAATTTTCACAATTTTTAAAGTTATTTCCTTAGTGGTTACTCTAGAGTTAACATGTACATCTTGACTTATAATCAGCTTCAGATTTATATTGACTTAATGTCAGTGAGATGTAGAAATATTTCTCGTATGTAACTCTATTCCATTTTACCCCTTCTGGGGGTATTAAAAATAGATGTTTCTTAATTTTCTAGACTTTAAATGTTTCTTGTGTTATTTTTAAGAATTTTCACCAGTTAAACTGGGAAATAGGTCTAAGAGCTCCTCATGGTATCATACTAGAAGTCTGTCTCCCTTCCTACATTTAGGTTATACGTCAGTATTTCACATGTAGGCCTTTGCTACTCTCTCTGCTTATTTCAAGTTTCAGTTTGCTTCCATTTTTAATACATAATGGCAGCTTTCCTTTGACCTGTGACCTCCAGTGTATTTGATCTTGGTCTCATTGCCCTGTCATCCTATTCTTAGCTTTGAAACCCAAACAAAAACAATATAGTGAATTTAAACAGAATTTTATATGAAGCACATATTTGTTTCTTAATCTTAAAAGATCTTTTTTCCCATGAAAATATAAAATAAGATATTTTAGTCCACTTCCTATGTTTTGATATAATGGTTAAAATTCATCAAATTAACCTGCTAATATTATGTTAATGGTGCTAATATTTAAACATCATGCTGCATTTCTGTCTAAAATGAGCTACTTCCAACCCACACTTGATGATGGACCAGTTAACTTGGGCAGAGCAGAGAAGGCAAGGAAGGGATATGGAGAGAGACTGTGAGCCAGAGAGGCTCTCAGTAAGGAGAAGGTAATAGGGCACAGTGAGGGGGGCACTGAATGGAGAAATTTCTTTGGTTGTTCTTAGCCTGACAGTGTGGAGAAGGCAATGGCAGTCCATTCCAGTACTCTTGCCTGGAGAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTTGCTAAGAGTCAGACATGACTGAGCAACTTCACTTTCACTTTTCACTTTCCTGCATTGGAGAAGGAAATGGCAACCCACGCTGGCAACCCACTCCAGGCAAGAACACTCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCGCACAGAGTCGGACATGACTGAAGCGACTTAGCAGCAGCAGCCTGACCGTGAGAAACACTCTTTAATGGTTACTTGGGGTAATTTCAGGAGAATCAGTCCACTTCCAGATTTCAGCTGAAGCAAACAGAAACTGCTTTTCTGGTTGTCAGCCCAGTCAATTTCCATTATAATTTGGAAATCTCAATTGAAATTATTCCAATAAGCAGTTGCATAACTTCTGGCTTTACCTCTCTTCATGTAGTACTCAATATCAGCATCTCTCAGTTTCAATGCCAACTTTATGAAGATTTATTTCATATTTTGGCTCTAACCTAGGGTCTTCCCTGGTGGCTCAGTTGGTAAAGAGTCTGCCCACAGTGTGGGAGACCTAGGTTCAATCCCTGGGTTGAGAAGATCTCCTGGAGAAGGAAATGGCAACCCACTTCAGTATTCTTGCCTGGAGAAGTCCATGGACAGAAGAGCCTGTTGGGCTACTGTCCATGGGGTCACAAAGGGTCAGACACAACTGAGTGACTAACACTTTCACTTCACTTTCTTGGCTCTAACCTAAATAAATCTATTATGAAAATAGATAAAGTAGCAATTTAGTGTATTGATTTCAGCGCAGAATTGATTCACTCCCTTCCATAGGTTAGAGGAAGAGTGCCTTAAGTTGAACACAAAGGTTGTTCTCTCATTTTTTGCTCTTATCTTTTAAAAAAAAGACTCTTGCAAGAGATTCCAGGTGATGTAATAGTAATTGAGGAGGAAGTGAATATTAAGCAGCCACATGTCCAAGATATCAGGCTGAACTCTGTAAAAACCTTTGATGACCCAAATTATTATGCTTCTCATCTTTCTTCTGGCAAG
Seq C2 exon
GATACCCAATACCAAAACTTGACGTGAGCTTTCCATTGGAGCATAGAGAAGAGGCATGGGTGAAGGAACTGCAAGATTCCAAAGAAATTAAGCAATTACTTGATTCCAAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018090:ENSBTAT00000024080:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]