BtaINT0165724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031686 | ZNF566
Description
Bos taurus zinc finger protein 566 (ZNF566), mRNA. [Source:RefSeq mRNA;Acc:NM_001077017]
Coordinates
chr18:47247331-47250339:+
Coord C1 exon
chr18:47247331-47247403
Coord A exon
chr18:47247404-47250212
Coord C2 exon
chr18:47250213-47250339
Length
2809 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TAACATGGTTGTTGTTCCAGGAG
3' ss Score
7.29
Exon sequences
Seq C1 exon
CTCTGCTTCTTTCCAAAAAAGGAGCCCAGAGAAGAACTGGTCCTTTTCTGCAAATATCAAAGCCATGGCTCAG
Seq A exon
GTGAGATGCTGTTTCTTTCTGCTCAGATAGAGTCATTTTTACGCCTAGTACATGTAAATATTTGCTTTCCTTATCACGATGCTTTTTGGTGTTTTACAACAACAGCAGCCTTCAGACAGCTCCGTTATACACAGTGTCAAAGTTCTCTTACTCTTGCTCTAAAGAAAAGGTCTCTAATAAGCCAATTCAAAAATTGCTCTCTTGGTGGAGATATTTATAGAAACATATAAGTGGTTAGATAATCATTTAAAAAAAGGAAAGAATATCTGGTTAAAGATCTTTTATACTCTTAGATACAGGTAACTGTTCAAGGGCTAAAGGGACCAAGTTTCTCTGAAGAAGTCTTAATCAAATTAAAATCCATTAGAAAATTGCTTACGGATTTCAGCATAAATCCTGATTTGTTCCCACATACTGTGAATTGCATAATGTAAAAACAATCTGACGGAGACTAGGTTTGGAAAAAATTTTTTTGCACTGGTTAATATGGTCCCCCTTCAGGAACCTGACCTTATTTCCTCCTAAAACAACCCAGTGCCCTCCACAGTTCCTTCTTTTAAATAACGTTTACAATCTCAGTTAATAAGTCTTTCACCGTCTTCTGTCAGATTTGTGTCAGAAATCTTGGCAGAACAGAAATGTGTTTTCCATTAGTTAATGAATCTAATTTTCTTTGACAGTGATTGATGGGATGGAGGTGAGTAGGATAATTAGGCACCTCATAGGGAAAAGCCCTATCATTTCCACAGACCTAGATTTTCCAGGAAGAAAATTTACGGGATGGTTTTGTTTGATGTCATTCTTTTTTTTTTTTTTTTTAATTTTTATTGTCTTGGCATGTGAGATCTTAGTCCCCTGACCAGGGATTGGACTTGTGCTCTCTGCGTTGGGAGCACCGAGCTTTAACCACCTGACTACCAGGGAAGTCCCTGATGTCATTCTTAATACACAGAAAGGTCTCTTAATGTATGAGCCCTTCAGGTTTGGGGGTATGACTGGTGGTTATAAAAGTCTTATGTAAAACTCTGACACCCCACGAGATCATCCGTGATAAATAGACTTCAGTAATGCCATTGTGTGAAGCTAGATCATGCTCTGTCAATTTCCTGTAGCTTAGGAACAACGGGTATTTACATCGAGCAATGGGCAGTTTTAGGTAAAATTGGACTAACGTTGGGAAGGTCTTTAAAGATCACTTACAGCCTCAATGTCCGAAAGCAAAGGAGAAGTCATTTATTTCCATATTACAAAACATTCAGTGAAAAAAAAATGCTTATAAAAAGAATTTGTTTAACAAGAAATAACTCTTATTATACAGTTTATAATAGTGTGACATTGGAATGGATCAGTCTTGGATTATATGCAAATTTAATTTTCTAAGATAAAATATTTTTTAAAGTTATTTTGTACATGTTCACGAATAAAGTAGGGCTATTTCATTCTGGCCCCTCTACCAGTTCCATTCCCAAAGCTGCCTTCAATTCTTGAATATTGATTATCAGTTTTACTCATTATCTTTTGACTTACTGCAGAATGGAAAGGACATTATACTCATATATTGCACCCTTCATTTCCTCTGATCCTGTTATTATATCACAATTTTTGGTTAAATTGATAGTGTACACATTGTCACAACTGCAAGTATCCCTCACTGCTGAGCCAGATCATGGCTTTATTCTGTTACAGCCTTTCATTTTTCCTGGGGTTAATTGCTTTTTCCCCTCATTTGCTTAGTTGTCCATGTATTTATATCCAAAATCTCCAAATCACTGCCACATGCAAGTCAGTATGTTTTCCCGTCTGATCAAATACATCAATTCCTTTGAACATGGAAACTTCCATCCCTGTTCCCTTTTTCACCCTGCTCCCATTTTGTCTGTTGCTCTCTAGGCTGTTTCTCAAAGACTTCCCCTTTTTTCCCTGGGATTTTCCTTCTCTGTTTTCCTGTGCTAATTTACATATTTATTGAATCTCATGTCTTCCTCTTCTCTGGTTTACTCTCTGATTTTGGTGGAGCACAACCACTGATAGTTTCCTGAGAAATTGTGCTTGAGTCTTTTCATGTCTGGAAGTTTCTTTTTTCAGTTGTTACAACAGAATGACGATTTGGTTATGGAATTCTAGGTCAGAATTTCTTTTCTTTTGGGTGGAGGGGTGTGCCATGGCAGCCTGTGAGATTTGGTGCCCTAACCGAGGATAGAACTTGTGCTTCCTGGTTCTGGGGGGCGTTGGGAGCATGGAGTCTTAACCATTGGACTGCCAGGGAAGTCCCCAGAATTTCTTCATCAGCATGTTGAAGAATTGTTCTTACCATTTCTTATTTTTAGTGGTTTTCTTAAGAACCCCATTGCCTCTGTGATTCTTGATGGCTTTTATCCAGCCTGCTCTCCTCTGGATGCTTTTAATGTCTTCTCTTTTCCCTTATTCTGAAATTATACTCTTAGCTGTTTTGGAAAAGAAACTCACATGTATTCATAACATAGCATTTGCAAAGTGTTTGTATATACTACTTCATTGAATTGGGAAGCTCACCTTGGCTGGATTTTATACCTCCCCAGACTTAGCTGGATAACAGAAGTACCCAACTATCCACAGGTAGTTTTGCCTGGAGGAAACAGAATGACTTGGAAGCATAGTGATTCAGTCCTGTTTATTTGCTTACAGTCCTCCAGAGGCATCCCATTCAGTTCTACTCTGTGTGCTTGCTATTTTCAATTCTTCTTTTTTTCTTCTCTCTTTCCTTCACAAAAACACATGTTTTTATTAATCAAACCTAATTTTTAAAAATTTAACATGGTTGTTGTTCCAG
Seq C2 exon
GAGTCAGTGATGTTCAGTGATGTGTCCATAGACTTCTCTCAGGAGGAGTGGGAATTCCTGAATGATGATCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGGTTTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031686:ENSBTAT00000006397:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development