RnoINT0168399 @ rn6
Intron Retention
Gene
ENSRNOG00000048138 | Zfp566
Description
zinc finger protein 566 [Source:RGD Symbol;Acc:1563239]
Coordinates
chr1:88420419-88425515:-
Coord C1 exon
chr1:88425456-88425515
Coord A exon
chr1:88420546-88425455
Coord C2 exon
chr1:88420419-88420545
Length
4910 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGTGTGGGTGTTGTTCCAGGTG
3' ss Score
8.75
Exon sequences
Seq C1 exon
TTCCACCCTGTTCCAGAGGAGCAGCACAGAGGACCTGCCACTATCAAGGTCATGGCTCAG
Seq A exon
GTGAGGTTTATTTTTATTTGGATACAGTCGTTTCATGTCTAGTACAGACAAATGTCTGCTTTCTTCAACGTGATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTTGAACAAGGCACCTTCAGTTTAAGTCTAAACATAGTCTTGCCCTTGCTCTAAGGCCATGGTAGCCCAGTCATGGTAGGGTCCTTGCGATGGGCAGAGGGCTACCTGCTAAGGCAGTGGTTCTCCATCATCCTAGTGCTGTGACCCTTTAATACAGTTCCTTGTAGCGATGATCTCTTGTGTGCTGTGTAGAGGCATTGTCTGTCAATAAGAAGCTGGTGGCCCATCAGCAAGAGGAGGGAGTAAGAGGCGGGAGTTTCTCGGGAGATTGGAACTCTGGGAGATAAGATGGTCAGAGGCTGGAGGTGTGCCCTGGGATCTGAGAAAGTTGGACGCAAACCTAGAATAGAATGAATGGGTTAAATACGTGACGAGCTAGTCGGGGAGCGAGCCCAAGCTCATGGCCTAGCATTCGTTCATAGATAACTAAGTCCAGAGTCATTATTGGGGAACCGGGAAGTGATGGGTATAAAAGCCTGTGGTTACAGTTCCGCATGCTGGGTGACCCCCAGCTGTAACAGTATTTTTGTTGCTGCTTCATAACTGTAGTTTTACTGCTGTTATAAATCGTAATGTAAACATCTGTGTTTTCCAATCTAAGGTGGCCCCCGTGAAAGGGTGGCTATAACCTCAAGTGGGTCGTGATCCACAGGTTGAGAACTGCTGCTCTGAAGAGTCTCTAGGAGACAAATGGAAAAGCTTTGGGGGCAGGGGTCCAGCTAGGATCACAACCGAAAAGTGGTGGTGCATGCCTTTAATCCCAGCACTCAGGAGACAGAAGCAGGAAGAGCGCAGTGAGTTCCAGGCTAGCCAGGACTACCTAATGTGATCCTGTCTCAATCTAACAACAACAAAAAGAAGAGAGAAAATAAGTGTGACTGTTCTACTCAGTTTCAGTCTTAGAACATCCATGTCTCCTGATCTATGAGCCTCTTAGCTTTGGAGCCATGACTGCTGGTTGGTCAAAGCTCTGTGAAACCTTAACTCTAATGTCATTGAGCCTTTCTTTCTTTTTTTTTTCTTTTTCTTTCTTTCTTTTTTTAATCTGTTTATCTCTTGGGGTGTTTTTCCTGCCAAGTATGTCCGTGCATCCCATGTGTGCCATACCTGCGGAGGCCCGAAGAGGGTGTCAGATCCCCTGGGACTGGATTGTTGGTAAGGGGATTTGAACCCCAGGTCCTCTGGAAGAGTAACCAATGCTCTCAACTGCTGAGCCATCTCTCTGGCCCGATACCATTGTATGAAGCAGCATCTTTCTCAGTCGTTTTCCTGAAGCTCAGTAACAGGGGCAGTTGACAGGTCGGCAGTGGTGTTTTTCATACCACTGTTTCCCACATTAAGGTTATCTTTTTGTAGGGCATGTGGGCCTGTGCCACCAGACAGGCATAAGAACTGGTAACACTGAGTGAGCTCAGACCCCAGGGATCTCAGAGACTTGAGAACAGCAGGAGTTGAGCGACTTCCTCTCTACCTGCTCTGCAACCATGGCACCCCAAGGAGAGGACCATGGGCATTCAGTCATGTAACGTAGCACATGGAGTCCTTCCCCATGGAAAGAGAGCACCACTAACCTCTCAAATTCAGCCAGTAGAAAACACCCACCCCTTAAGTCCCAGCCCACTCCCCAAGGTTCACATAGTCCCTGTCCATGTGGAATAAAGCACACAGGCTGTTTCACAGTGGCTTGTCCTTACTGAGTGTAACACTTACGGAAGAGTTCGCTCTCCTGGAGCATTCACTGCTGGATCTTGGACCCGCCTGGCTAACCAGGCTCTTGCCTCCTCTGCAGAGGCTCCTGTCAGAGTGGCAGCTCCAGCTGCTGCCACTGCCACTGTTGCTGTAGCTGGTGAGAGACCCCGGCTATGGCCACCCAAATCTCTTCGCTTTTCTTCTGAGAGTTGTAACACTCCTGGCACTCCTGGCTGTCCAGGAGCCCCATGGGACCTATCTGTTCCCATCTCTAAACACCCTTCTCAGTCTGGCCTGGTGTACAGAGGCATCTCACGCCCCAGAGGGAAGCAGATGGACAGCACACATCTTTTGTGTGTGTGTGTTTGTTTTCAGACTGAGTCTTCTAGGCTGGCTTCCAACTCATTCTTTAGCTGAGGATAACCGTGGGCCATCCTGCCCTCCTCTCTCAGGCGTTGGACTTACAGGCATGTGCCACCAGGCCCAGTTGATATAGAGCTCTAGGGATGGAACCCAGGGTTTCATGGCTGCTGAACAGGTATTTTACCAAGTGAGCTACGTCTCAGGTCAGAGAAGTCTTTAAAGATTAATATTAACCTAAATGTCTAATGGTAGATAAAAATTGCCATTTATTCTGGGTGGCTCATGCCTGAACCCCAGTGTTTAGGATGATGGTAGATTTGAGGCAGCTTGCACTATGGTGAGTTCAAGGCTACCCTGTAGTACATAGTGAGCCCCATCTTGAAAAGCCAAGGACTGGGAAGTAGCTTATTGGTAAAATACTTTGTCTAGCATGAGAAGGCCCTGAATTCATGGATTTTATCCCAGACAATAAGCAGGTGAACAAGACATTGGCATTTATTATCCTTAAGATGGAATAGTATTTAATCTGAAATAAATATGCCTCTATGCTTATTATAACAAGTTGTCCGTCCTGTCCCCTCCACCTCCTATCCCCCACACCCACCTCCTACTACCCTCCCACCTCCTATCCCACACCCACTCCTACCCCACCTCATCCCCCGACCACCCACCTCATCCCCCCACACCCCACCTCTACCANNNNNNNNNNNNNNNNNNNNNNNNNATTAAAAGTCTGTACTACCTAGCCTGGCTTATTTATTTATATGTCTATCAATATTAAGATTTTTTTCTTCTTTTTCTCTTCTTTTTCTTTTTTCTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTGCTAGGGAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAGATTTATTTTTTTTAATATGGGGGAGGGCACCTGATTGTACCGTATTTCAGTCCTAGTTCTGAACACTGTGTTGCTCCGTCCTCAGAATGAAGGAATTTGTGTTTTCTTCCTTGTTGTAGAGACAGGTTCTCCTCAGCCTAACTTAGGATTCAGTTGTGTCCTGTGACGGGCCTGTCAGACTTGTGATTACAGTCACGCAGCATCACGCCCCATACATTGATTCCTTTGTTTGGTTTTTGTTTTTCAAGGCAGGATTTCTCTGTATAAACATGGTTGTTCCGGAATTCCCTCTGTAAACCAGGCTGGCCCCACACCCAGAGTTCTGCCTGCCCCCGCCCCTGCACTCAGCTACATTAATTACTCTTTGTTCCATTTTCCTAGTTATTGGTCTATTTATATCTACACTCTGATATTCACTGTTGCTGGCTTGGCAGAAATGAAGATGTTCCAGATCCTTCTGTCTCTGGATCAATAGTCTTGACTATCAGACTATTGGAGTGTGGGCTCCAAGAAATGGCATGTTGTTTTTTTTTTTCCCCCAGCTATCTCATCTTGGGAGAAAGGAAAGGTCCCAGCCTTTGTCTCCTGGAAAGAGATTTACATCTCACAGCTTCCAGAGTACCGGAGGGGCTGAGCCTGAAGCCCAGAGAGTGATGATGGGTTAGTGGAGGTTGAAACCACACCCTGACCAAGACCGCTTAGATGTTCATGCCCTCGGCCCTCCTTCTAACTTTCAGTGTCAAGGACAGCCCTCTGCTGTATACTCTTAATTAGGTTCCTTTAAATGAGAACAGGTGGCCCAACCTATATTGGGCACAGGGCGGGGCCCCAAGCTTGATGATGTCATTGCCACGCATTAGTCAGTGAGTTTCATGGTTTTTTATTTCTAGTGTGTGAATGTTTGCCCCCTTGTCTTTGTCAGTACCGTGTGCATTCAGCCAGAAGAGGGCGTCAGATCCCCTCAGACTGCAGTATGGGTGGTTGTGGGTTCTCAGAACCAAACTCAAGTTCCCTCAAAGAGCAGTAAGAACCTCTCTAGCCCATCAGTGCGTTTCCATCTGGTCAAACACATCATCTTCTTTTGGACTCAGACACGTCCTCCCCATCCCTCAGTGTCCTTGTTCCCATCTGATCTGTTTACTCTCTAGATGCCACCACTTCCTGAAACTATCCTTTCCCTGGGTTTTCCTCTGAGACTCTCCTGTTGACTTCTGCCTCTTTCCTGCATCCCATGGCCTTTTGGGGTTTACTCCCTCGTTCTGGAGGACCACATCCTTCAGTAGTCTCCCAGGAACCTGTACTTGAGTCCTTGCGCATATCTAGGAATGTACGAGCAGAACGGAAGATGGTTTAGCTATGGTCGTCTTGGTCAGAGTTTATCTTTCTCCACTGGCTACTGAATTGTTTCTTGTGTCCAGAAGTCTTAAGGATCCATGACTCCTCTGCCTCCTGATGCCTTTCACAAAGCCCGCTGTCTTTCTGGATGCTTCTAATGTCCCTTCTTTTTCTTCTACCCCGAGATTTTTCTCTTGGCTGTTTGAGAAAAGAGGACCGTAGGTGGGAATGCAATGAGGCTTTGTGTAAGTCATTTAGTGCAGAGGTCCTCCCGGCTGCGTCCGTGCCTTCCCAGCTTCCTGTGGATAATGGAGGAATTCATTCCAGCACAGTGGTTTGTTCACAGGCCTTCTCTATGACTCCAGACATTTATCCTCACTGCCTTTAGCTTGTTCTCCCTTATTCCTTTTCGACTGTTTTTCCTACATAGAAACAACCCTCTTCCCTCTTCTTCCTCCTTTTCCCGCTACCCTCCCCCTTCTATTAACCAAGCAATGTGTGGGTGTTGTTCCAG
Seq C2 exon
GTGTCAGTACTGTTCCATGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTTTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048138:ENSRNOT00000074582:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]