HsaINT0187677 @ hg19
Intron Retention
Gene
ENSG00000186017 | ZNF566
Description
zinc finger protein 566 [Source:HGNC Symbol;Acc:25919]
Coordinates
chr19:36964234-36967518:-
Coord C1 exon
chr19:36967451-36967518
Coord A exon
chr19:36964361-36967450
Coord C2 exon
chr19:36964234-36964360
Length
3090 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATACGTGGTTATTGTTCCAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
CTCTACCCTTCTCCAAAAGAAGAGCCAAGAGAAGGTCCTTTTCTACAAATATCAGAGCCATGGCTCAG
Seq A exon
GTGAGATACTGTTTCCTTTTGCTCAGATAGAGTGATTTTTACTTCTAGTAACTGTAAACATTTGCTTTCCTCATGATGATGCTTTTTGATGTTAGAAAAACAACACCTTTCAAAAAGTTTGGTTATGAGCAATGTCAGAATTTTGCTGTAAAGGAAAGGATCTCTAACAGGCCAATTCATAGAAAAAAAAAGAATTGATTACATAATCATTGTTAGAAAATTTACCCTTTTTTTTTTTTTTTCGAGATGGAGTCTCGCTCTGTCTTCTAGGCTGGAGTACAGTGGCACAATCTTGGCTTACTGCAACCTCTGCCTCCAGGGTTCAAGTGATTCTCCTACTTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACAACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGAGTTTTTGCCATGTTGTCCAGGCTGGCCTCGAATTCCTGACCTCAAGTTATCCACCCGCCTCAGCCTCCCAAAGAGCTGGGATTATAAGCATGAGCCACTGTGCCCAGAAAAAAATTTATATTAATTCACTGTTAACTGTTAGTCAGCCAAGTGGTTGAATAACAAATTTCTCTGAAGAAGTTTTAATTTAGATTAATGTCCATCAGAAAATCCCCTATCAGTTTCATCAAGAATACTTATTTCTTTCTTTCCATAAAGAGATTTAAGAATTATGTAATGTAAAAATTATGTAATGTAAAAACCTGACCCAGATCAGGTTTGGAATAATTTTTTTTACACTGGTTTCCAGGGTCCCCTGTCAGGAAAAGGACATGCATTTCCTCCTAAACAACCCCAGTCTCCTCTTCAGTTCCCCGCCGCCCCCCGCTTTTAAACAATGTTTACATGCTGGTTTACAAGTCCTTCAGCATCTCCTATCTCAGATTTCTACCAAAAATCCTGATAGGGCAGAAATGTGTTCCCCACATTGAATTAATATGAATTTAATTTGCTTGGACAGTGATTTGATGGGATGAAAATAAGTAATTAGGGGCACCTTATAGGGAAAAGCCCTCATTAGCTCTGTAGACCTGGGTTTTCCAATAAGAAAATACATGCTGTGGTTTTGTTTGATTTCAGTCCTAGTACATGGCAAGGTCTCCTGGTTAACGAGCCTTTTATGTTTGAGAGTGTGACTAGTGGTTGTTACAAAGCTCTCACACCTCACTAAGCATCCATGAAAAATTGATGTCAGTGGCCAAACGTGGTGACTCACACCTGTAATTCCAGCATTTTGGGAGGTTGAGGCTGGTGGTTTGCTTGAACCCAGGTGACTAGCCTGGGCAACATGGCAAACCCCATCTCTACAAAAAATACAAAAATTAGCCAGGCATGTTGGTGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAAGTCATGGCTGCAGTGAGATGTGATCATGCCACTGCACTTTGGCCTGGGTGATAGAGGAAGATCCTGTTTAAAAAACAAAAGCAATGATGTCAGTAATACCAACGGTGAAACTGGATCATCCTTCACCAGTTTTCTGTAGCTTAGTTATAAGGGGAATTTACAGCTGGGCAGTAGGTGGTTATAAATAAGATTGGGCCAATGTTGGCGAGGTCTTTAGAGATCACCTCTAGCCTGAATTTCTAAAGGCAAAAGGATAGATGTCATTTATAGCCTTATAATAGAATAGTATTCAGTGAGAAACATATGAATAGCATTTGTTGTAACAAGGAATATTTCTTATTATATAATAGTCTGGCATAGGAATGGATCAGAGTCTTAAATTATATGCAAATTTAATTTTCTAAGATACAAAGTTTTTAAAAGTAATTTTACACATGTCTACAAGGGAAATAGTTCAATTCTGGTTTTGTCCCGTTACCAGACCCACTCCAAGAGGCCACTGCCCTCAACTCTTGAAAATTGGTTTACTACCATTTTTCGATAAACCCACTTTAGTCATTATCTCTTGACTGATTGCAAAGTTAAAGGGAACATTGTATTCCCATACTGCACTTTCGTTTTTCCTGACTGTTACCATATCACCATTTTTGGTTAAATCAATAGTATACACCTTATTACGGCTGCAAATATTATTCTCTGCCAAGCGAGCTCATGGCTTTGTTCTATACAACCCTTCATTTTCCTGGGGTTAATTGCTTCCCCCCTCATTTGCCTAGTCATTTGTGTGTTTATATCCAGAATCTCCAGCATCATTGCCACAGGCCAATCAATACGTTTTCCCTCTGGTCAGACACATCAGTTCCTTTTGATATAGAGACTTGATTCCCCATTTCCTGTTTCCTTGTTCCCATCTGGTCTGGTTTACTCTCTCAGTCACAGCTTTCCTGAAACTTTACCTACTTCCTGAATCCTATGTTGTCTTCTTTTTTTGTTTACTCCCTCGTTTTTGTGGACCACATCCTCTAGAAGTTTCTGAAGAAACTCTTCTTGAGTCCTTGGATGTCTACAAATGTCTTTTCTCAACACTCAAAACAGAATGATAGTTTGTTTATGAAAGTCTAGGTCAGAGTTTATTTTCTCCATCAGAATATTGAAGAATCGTTCTTATTGTTTCTTGCTTTTAGAGGTGTTCTTGAGAATTCCATTGCCCCTCTAATTTTTGATGCCTTTTATATGACCTGCTCTTCTCTCTGGTGGCTTTTAATGTCTTTATCCCTTATTCTGAAATTTGACTCTCAGCTATTTGGGAAAAGAGAGGGAGAAAGATCACATGTATCGTTGATTTATTATATGACAGGTATAGTGTGAGGCATTGCATATACAATTTCATTTAATTGGAAAAGCCCTCTTAGCTGAATTTTTGTACCTTCCCAACCTTGTTTGGATAATGGAGGTATCCTAGCATACTCAGGCAGTTTCATTTGGAGGAAACAGAATGACCTGGAAACCCAGTGATTCAGTTGTGCTTATTTGTTTACAGTCCTCCACTGCTTCCCAGACATTCATATGCTCACTATATTTTACTTCCTCTACCTTAATCTTTTTCTTCTCTCTTTCCTTCACAAAAGTACTTTTTAAAAAATTAATGAAGTCATATACGTGGTTATTGTTCCAG
Seq C2 exon
GAGTCAGTGATGTTCAGTGATGTGTCCGTAGACTTCTCTCAGGAGGAGTGGGAATGCCTGAATGATGATCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGGTTTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186017-ZNF566:NM_001145344:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)