MmuINT0179466 @ mm9
Intron Retention
Gene
ENSMUSG00000078768 | Zfp566
Description
zinc finger protein 566 [Source:MGI Symbol;Acc:MGI:1919806]
Coordinates
chr7:30866110-30872178:-
Coord C1 exon
chr7:30872119-30872178
Coord A exon
chr7:30866237-30872118
Coord C2 exon
chr7:30866110-30866236
Length
5882 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATATGTGGGTATTGTTCCAGGTG
3' ss Score
7.22
Exon sequences
Seq C1 exon
TTCTCCCCCGTTCCAGAAGAGCAGCACAGAGGACCTGTCACCATCAAAGCCATGGCTCAG
Seq A exon
GTGAGGCATAGGTTTTTTGTATTCGAATACAATCATTTTGTGTCTAGTACAGATACATGTCTGCTTTCTTCAACTTGGTGCTTTTTTTGGTGTTGAACAAGGAACCTTCCATTTCGGTATAAATAGACTCTCACCTTGCTCTAAAGCCATGGTAGCTCAGTCATGATAGGGTCCTTGTGATGGGCAAAGGGCTACCTGTTAAGGCAGTGGTTTTCCATCTTCCTAATGCTGTGACCCTTTAATACAGCTCCCTGTAGGGATAACCACGTGTGCACTGTGTGGAAGCGTTGCCCAGCAGTGAAAAGCTGATGTGCTGTTAGCAAGAGGGAGGGAGTAAAAGGGGGGAGTTTCAGGAGAGCGATTGAAACGCTGAGTCAGAGCTGGAGGTTTGCCCCGGGATCTGAGGATGTTGGATGCAAGCATAGATTAGTTTAAGTGGGTTGTGTAAGTTACAAGCTAGTCAGAGAACGAGCCCAAGCTCATGGCCTAGGCCCTTACTCATAAATAAGTCTCCGAGTTGTCATCGGGGAGCTGGGATGTGGGTAGAAAAGCCCGTGGTTACAGTTGCTCATGCTGTGGCGATCTCCAACCACAAAATTATTTTTATTGCTACCTTATAACTATAGTTTTACAACAGTTATGAATCATAAACGTATGTGTGGTTTTTGATCTAAGGTGACCCCTGTGAAAGGGTTGTTACAACCTCAAACGGGTTGTGATCCACAGGTTGAGAACTGCTGCTCTAAAGGAAAGAGTCTCTAGTAGACAAACTGAAAAAGCTTTGGGGGCAGGAGTGATGGTCCAGCTGTTAGGTCCAACTAGGATCACAACCAAAGAGTGGTGGCACACACCTGTAATCCCAGCACTCAGGAGGCAGAGGCAGGAAGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTGCAGAGTGAGTTCCAGAGCTACCCAGTGAGATCCTGTTTCAATCTAACAACAAGGAAAAGAAGAAGAAAAAATAAGTGTGATACTTTTGCTCAGTTTCAGTATTTTTTTTTTAAATATCCTATCAGTTTGATAACAATAAAAAGACCCCCAAAATGGAAAACTGAGGGCAGGGACATGGGGATCCCTGCTCATGGCACCAAACCTGGCTGCAGGGTCCCCCGGTTTTGCTGTTGCTACGAGGTTGGGGGCAGCGATTGTCCTGTGGGAGCCACGGTCGTCTGAGTCAGGACCCTCACTTCTTCTCGGGTGTGCTCAGCTTCAGCATGCCCGGATCTTGTCCAGCAGGCCAGAGATGAAGGCCTCAGCGGGTTTGTAACAGTCAACTAACAGCTCCCTGACTCTAGCAGCCTGGCTATCATCGCTTTCCATATCCAACAGTTCATCCACATCTGTCTTGAGCTCTGGCAATCGTAGAGTCACGTGAGCTGTTCTAAAACCCACTCCTCTAGGTTGAGCCACTTCCTTAGCTCCTTGTCGTACTTGACGGTGACCATCCCTTGGCCTTCTCACTGGGCCATCGTCATCTGCCCCTGCCTCTTTGTCTGCAGCCCCAGGGGGACTCTAGAAGTAGACATGGGGCCCTGTGCTGCCACTGTCCGGCCTGAGGGCCAAGACAGCCAATGCTGCAACCCCCCACTCCCCTATCCCTCCCATGGGAGGCTGTCCACCTTGGTGGATGCACCTCCTGGATGCCCGCCAGCCAGCGGCTGGCTAGCTCGTGGGGTCCACCCATGGTGAGTGTGCCGGTGAGGGTGCCCGGGGGCAGCTGCAGCATGCGGAGCCCCCCACCTCAGTTTTAGTCTTAGAACATCTGTGTCTCCTGGTTTATGAGCCTTTAGGTTTGGAAGTATGACTGCTGGTTGGTCAAAGCTCTGTGAAACCTTAACTCTAACGTCATTGAGCTTTTCTTCTTCTTTTTTTAAAATCTGTTTATCTGTTTGGGTGTTGTGTATCCCATGTGTGTCATACCTACGGAGTCCAGTAGAGGGTGTCAGATCCTCTGGGATTGTTGGTAAGGGGACTTGAACCTGGGTCCTCTGGAAAAACAGCCAGAGTGTTCTCGACTGTTGAGCTCCCAGACCAATACCATTGTATTAAGCAGCATCTTTCTCCATCATTTTCCTGAAGCTCAGTAACAGGGGCAAGTAACAAGTCCGCAGTGGTGCTTATAAATACCAGTTTTCCATGCTAAAGTTACCTTTTGTAGGGCAAGTGGCTGTGCCATCAGACAGGCATAGGATCTGGTAACAGTGAGTGAGCTCAGACTCCAGGAATCTCAGAGATTTGAGAGCAGCAGGAGTGGCTGCTCCTATCTCTGTACCAGTCCTGCAGCCATGACACCCCACCGAGAGGACCGTGGGCAGTCTGTCCTGTAATGTAGCAGCCAGAGTCCTTCCCCGTGGAAATAGAGCACCACTAACCTCTCAAACTCACGGATAGAAAACATCTACTCCCTCAATCCCTGTCCACATGGAAAAAGCACACAGGTTAGTTCATGGAGGAGTGTCTTTTCTGAGTTGTAACACTTGGGCAAGAGTTTGTTCATCACTGAATCGGGGACCCACATGGATGGCTAGGCTCTTGCCCCCTGCAGAGGCTCACATTAGAGTGGCAGCAGCTGCAGCTGCAGCTGCCACCTCTGCCACTGTTGCTGTAGCTGATGAGAGTCCCGGGTCCCCGGCTATGGTCACCCAAACCTCTTCTTTTCTAAGAGTTGTAACATCCCTGGAGTTCCTGGCTGGCCAGGAGCCCCATGGAACCTATTTGTCCCCATCTCTGAATGCCCTTCTCAGTCTGGTCTGGTGTGTACAGGGGCATCTCATACCCTAGACGGAAGTGAGTGGACAGCGGACATCTTTTGTGTGTGTGTGTTTGTTTTCAGATGGAGTCTTTATAGGCTGGCTTCCAATTCATGATTTAGCTGAGGATAACCTTGGGCTAATCCTGCCTTCTTCACCTCTTGGGTGTTGCACTTACAGGCGTGTGCCACCAGGCCCAGTTTATATAGAGCTTTAGGGATGGAACCCAGAGTTCCATAGCTACTGGGCAAATACTTTGCCAGGTGAGCTGTGTCCCAGCTCAGGGAAGTCTTTAAAAATTAATATTAACCTAAAAGTCTAATGGTAGGTAAAAATGTCATATGTGCCGAGTCCATTGGCTCAAACCTGAATCCCAGCGTTTAGGATGATGATAGAGACCAGCTTGCACTACGGTGAACCCTGAAGTACATACTGAGTCCATCTTGAAAAGCCAAACACTGGGAAGTAGCTTATTGGTAAAATACTTTGTCTAGCCTGAAAAGACCCTGGGTTCCTAGATTTCATCCCAAACAAGCAGGTGAACAAGAAATTGGCTCCCCCCGCCCCCCACAGGGTTTCTCTGTGTTGCCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCTACCACTGCCCTGCTGGCATATATTAGCCTTAAGATTATTATGTAATTTGAAATAAATATGCCTCTACACTTAATATAACAAGTTGTCTGCCCTGTCCCCTTTCCAGCCCCCACCCCTTTTATTTTAAACACGTCTGTCTCAGTTTGTAGACTAGGCTGACATTGAATTCACTGAGACTGAGATTCAAAGTCTATATACTCCCCAGCCAGGCTTATTCATTTACTTATCTATCAATATTAACATTTACTTTTTTAACATTGTGTGGGGTACCTGATTGTAACATATTCCAGTCTCAGGTCTGAGCACCATGGTGCGTGCCCTATTCCAGTTCTTGGAATGAAGGAACTTGTGTTTTCTTCCTTGTTTTAGAGATGGGCTCTCACTCACTGTGACTGGCCTCAAACCCGTGGTTGCTGCCCTGCGTGGTCACACCCCGTACATTAATTACTTTGATCGTTTGCTTATTGTTTTGTTTTTCAAGGCAGGATTTCTCTGTATAACCCTGGTTGTTCTAGAACTCCCTCTGTAAACCAGGCTGGCTTCAGCCTCACAGATCCATCTGCCTCTACCCTCAGCTCCATTAATTAGTCCTTGTTCCATTTTCTTAGTTATTGGTCTATTTAGATCTGAAATCTCTGATATTTACTGTTTACTGGCTTGGCAGAAATGAAGATGTTCCAGATCCTTGTATCTCTGAGTCAGAGGTCTATCAGACTACTGAAGTGTGGGGTCCAAGAAATGGCGGCGTCTACCACACCCCCGCCTATCTCATGCAGGGAGGAAAGGTCCCAGCCAAAGGGGGAACTGGTCTCCTGGAAAGAGAATTTACATCTACCAACTTACAAGAGTACCCAAGGGGATGAGCCCGGAGCCCAGATAGTAATGGGTCAGTGGTGGTTGGAACCATGCCTTGACCAAGACTGCTTAGATGTGCATATCCTCTCTCTGCCCTCCTATTAACCTTCAGTCTCAGGACAGCTCTCTGTTTGGTGGTCATGTTTAATAACTCTTTTTTTTTCCTACCTCATTATACTATTACTATTGATTTGGCTCATTTAAATGAGGATGTGGGGGGCGGGGGGGGGGAGAAAAAAATGAGGATGGGTGGCTGAACCTTTATTGGGCACAGGGCGTGGACCCCAAGTTTGATGATGTCATTGCCACACAATTGTCAGTGAGTTTCATGGTTTTTATTTCTTGTGCGTGAATGTTTCCCCCCTGTTTTTGTCAGCACCATATGCACTCAGCCAGAAGAGGGCATTGGATCCCCTCAAACTACAGTATAGATGGTTGTGGGTACTCAGAACTAAACTCAAAGAGTAGCGAGTACCTTGAACCCGTGAGCCTCTCTAGCCCGCTAGTGCATTTCTATATGGTCAAACATCGTCATCTTTTGGACATAGAGACTCCCTCCCCATCCCTCAGTGTCCTTGTTCCTTCTAGAAAGTTCTGTTTGCTTTCTAGAAGCCACCGCTTTCCTGAAACTTTATTCTTTCCCTGGGTTTTCCTCTGGTAGTCTCCTGTTGACGTGTGACTCTTTCCTGCATCCCATGCCGTTTTTGGTTTACGCCCTCGTCTTGGTGACCACATCCTCCAGTAGTTCCCCGGGACCCTGTACTTGAGTCCTTGTACATCTAAGAGTGTACGCTCAGAACAAAAGATAGTTGAGTTATAGACTTCTGGGTTTATTTTTCTCCACTGGGTACTGAATTATTTTGTTTCTTGTGTCCAGAAGTCATAAGAATCCCAGTACTTCCTGATGGCTTCACATAGCCTGCTGTCTCTCTGGATGTCTGATGGCCTCACATAGTCTGCTGTCTCTCTGGATGTCTGATGGCCTCATATAGCCTGCTGTCTCTCTGGATGTCTGATGCCCTCACATAGCCTGCTGTCTCTCTGGATGTCTGATGCCCTCACATAGCCTGCTGTCTCTCTGGATGTCTGATGGCCTCACATAGCCTGCTGTCTCTCTGGATGTCTGATGGCCTCACATAGCCTGCTGTCTCTCTGGATGTCTGATGGCTTCACATAGCCTGCTGTCTCTCCGGATGCTTCTGATGTCCTTTCTTTTTCCTCTACTCTGAGATTTTACTCTTGGCTGTCTCAGAATGCCATGAGGCTTTGTGTACGTCATTTAGCGCAGAGGTCCTCCCGGCTGGGTCTGTGCCTTCCCAGCTTCCTGTGGATAATGGAAGAGTTCATTCCAGCCCAGGTGGCCTAGTCTGGAGGAAACAGTGCCACAGGGGCACAGTGGTTTGGTCACAGGCCTTCCCTATGATTTCAGACATTTAATCCCACGGCATTTAGCTAGTTCTGCCTTCTTCCTTTTCTATTGTTTTTTCCTACATAATAGAAGCAACCCCTCCTTCTCTTCCGCCCCCTTCTGTTAATCAGGCAATATGTGGGTATTGTTCCAG
Seq C2 exon
GTGTCAGTGCTGTTCCACGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATCTGTACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078768-Zfp566:NM_152814:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: