BtaINT0165734 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021742 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr18:47384124-47389039:-
Coord C1 exon
chr18:47388944-47389039
Coord A exon
chr18:47385707-47388943
Coord C2 exon
chr18:47384124-47385706
Length
3237 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TTTTTGGTCCTCCATTTTAGAAG
3' ss Score
9
Exon sequences
Seq C1 exon
GTTGTCAAGTCACCAAACCAGATGTGATCTTCAAGTTGGAGCACGAAGAGGAGCCATGGGTGGTAGAAGAAGAAATGCTTGGGCGGCACTGTCCAG
Seq A exon
GTGAATAAGTGAAAAGGCAGGTCTGAATGAGAAAGCCACATAGCAGTTGTTCAGGAGGTTGATACCATTTCACGTTTTCCAAGATTTGCTTAAGTCTTCTAGAATGACAGAAGATATGAATGCCTTGAATTATGGTGACACTTCTAGATACTGTTCTTCTTATGTTGCAGCTCTCTTCCTTTTTTCAAATTTTAAATACTAAAACTTCCTAGCTCATTTACAGCCTTACTTTCAGGATTAGTGTCCCTTTCTATGATCCTTAATCTTTCTTATTCCTTTGCATTCACAGGTTTTCTTTTTTGTGTGTTCAATATTTGAATTAAATTCCCTTTCATTTCTTTTCTTCTTTCTATTTTGAAAAGCTTCAGATTTGTTTTGTAACAATACTCACACTTTCTGTTGTACTTCACAACTCTCACAATCCAATATAGCTTTGAAAGTCTCTGTCTTACAGCTTGTTACCTCCTCCTTGCTTATTCACACCTTTCATTCCTTTAATTTTTTTGAAATATAATATAGGCACCCTTGGTTAAAAAATATTAACAATCCAAAAGGTAACATTAAAAAGTGAGTCTCTCTCTTACCCTTCACATTCAGTCCCTTTCTTTTCCAAGTTAAGTACACTTTTTTTCAGAGTCCTGCTGACCATTCTTGTTTATTTCACCATATGAATTTTATTTTTTTAATTTATTTTTTGTTTATTGGTGTTTTTTATTTTAAGGTGGAACAGTTTATTAAAGGAATTATGGATTTTTTTTTTTTTGGTCTGTGCTGGGTCTTTGTTGTTATGCGGGCTTTCCTCTAATTTCAGCGAACAGGGGCTTGCTACTCTTCTTTGGTGTGCACGGGCTTCTCATTGTGATGGCTTCTCTTGTTGCAGAGCACGGGCTCTAGGGCACTCAGACTTCAGTAGCTGTGGCTCTTGGACTCTAGAGCACAGTCTCAATAGTTGTGACGCACGGGTTTAGTTGCTCAACAGCATGTGGGATTTTCTCAGATCAGGGATCCGACCCATATCTCCTGCATTGGCAGGTGGATTCTTTACCAACTGAGCCACCAGGGAATCCCCGTCACTGTATGATTTTTAAATTTAACTATCTATTTCCAGAGAAAAACCTGTTGGATTTTTTTGCTGGGAATGTGTCAGAAGTATAAATGAACTTTCAGAGATCTGACATCTTTATACTGTCAAGGTTTTCTATCCAAGATCGTGTTCTCTGTCTTTGTTCGGATCTGCCTGTTTTGTATCCTTCAGAAATGCTTTCCAAGGTTTCTGTTTTACCTTTTGTAAATTTCTTACTAAGTTTATACCTAAGTAATAGACAAGAGAAAAAAAATAGTGCTAATGGAATTGGAAAGGACCCTATAAAACCATCTTTATTTACAGATGATAACATGATGTCCCTTAAAACACAAGAGATTCAACTTCAACAAACTTAAAGAGAATTCAGTGATATGGTAAGGTATCAAATTAACAAGTAAAAATCAGTTGTTTTCATGTATACTTCAACAACCAGTAGAAGATATAAGGAAAAGGAAACCGCATTAATAGTTGTAACAATATAGACAAAATACTATTCTGGATATGGGCATAAAACAATAATAAAAAAAAAAAGTCCTGTCTTCAGGGAGCTTATAATTTAGTGGGAACTAGAGTCCCTGAGATTTTGAAATTAAGAAAATATCTTTAAAAAAAAAACACTTTATATTTAGTTGATAGTTGGCTATGTATAAAATTCTTAGGCCACACTGTCTTCTCTAGAGGTTTTTGTAGACAGTTCCCTGAAGACTTTAGATAGTCCTCTACTGCTCCTTGGATTTGAATGTTTTTTGGAAAAATCTGAAGCCTGATTGTTTTCCTTCATACATGACTTGATTTGTTTGTCTGGATGCCCATAGGTTTGTTTTTCTTTAAAGCTTTCGAACTTTATGAGACTTATTGATCAGTCAATATCAGTTTTTCCTTTCAGCTTTTATATTCATATTTTTTGGTTCTTATAGTGTCATATAGATCTGAATAACTGTCATTCCTCATCTTTGAATAAGGATATTTCCTGCTGGACCCATTGTTTACTGAAGAAGTGTTGGAGATTGTCTAGAAAAATACTCTGAGCTAGTAGGAAGCCTCTGTTGCTTGTATCGACTTCCTCTGTCACAGAGTTTTGTGTTAAGAGTTGGTTTGCTCTTCATTTCTTCTGAATCAGAGATTATTAGTTGCATGCTTTCTGTAACACTCAGTTTCTCTTCTACCTTCCTATGTCAATATCCTGCTTATACGAGAATAATAGCTATTTGCATTTCTGCAGATATTTGCATCTATTTAGTTCTGTCTTTCCTACCTTTTGACAGGGTCAGAACAAGATGATTATGTTCCACCAGGCAGTCTTAACACATCCAGATTCCATTGTTGTAAAAAATGACTCATTCATTCTGTCCACAGGGTGTGCCTTCTGTTTGGGAGAACTCTGTTCACCATGCTTTCTGTCTGAGACAAGAAATAACAGCCACTGTCTCTTGGTTTCTTTCCTACCTATTTCTGTCTATCCTGACTTTACTTATACTTTGGAATTGCAGTTTAGCTGCCTTTTAGTATAATTGAACACATATTTCTTTTTCTGTTTTTTCTTCATGTTTGCAGGGAGAGAAGATAGAGATGTTTAATTCCACCATGTTGAAAGAGGAAATTCTCTTCTGTATTTGATCCTATGGATCACCCTTCTTGGAAATGTCTTCTTTACTCTTCTGTAAAGGATTCTGATTTCTCCTCCATTTGTTTATTTTTTCTTATTCCCTTATGAACTGTGTTTTACATAATTCCTCTTCTCCAGCCCTCAAGAACATTATTGAAACTAGTTCTAAATTACATATGGACTCCTTTTTCCTTTATGTACCTTCATGATGTAGATGTGTTCCTGCCTTCAAATCAGTATGTAACTCCGGACTTTAAATTTATCTTCTTTTTTTCCAGCCCCACTCTTCTCCCTGCCTTTCAAGTACCTAAATCCTCCATTTTGTGTGTGTGTGTGTGTGTGTTTGTGTATTTGTTTGTGCTGCATGGCATGCAGGATCTTAGTTCCCTGACCAGGGATCAAACTTGCACCCCCTGCAGTGGAAGTACAGAGTCTTAACCACTGAACTTCCAGGGAAGTCCCCCCACTTTAGCAAATTTATGAAATGTTATCAATAGAGCAGTAGGAGAAATATTCAAAAGTCATAATTTTTGGTCCTCCATTTTAG
Seq C2 exon
AAGTTTGGAAAGTTGATGAACAGATCAAGAAGCAACAGGAAACCCTTGTGAGGAATGTCACATCCATCTCCAAGAAAACTCTGATTAAGGAAAATGCCGTTGAATATAAAAATGTTGCAAAAGTATTTCCTCTGGACTCAGACATTGTTACTTCAAGACAAAAGTTTTTCGAATGTGACTCACTTGATAAGGATTTTGAACATAGTTTAGACTTATTTAGTTATGAGAAAGGCTTTATAAAAAAGAAAAGTTATGAATGTAATAAGTATGGGAAACCATTTTACCATTGCTCATCCCATGTCATAACCCCCTTTAAGTGTAATCAGTGTGGACAGGATTTTAGTCATAGATTTGACCTCATCAGACATGAGAGAAGTCATGCTGGAGAGAAACCCTATGAATGTAAGGAATGTGGAAAAGCTTTCAGTAGGAAGGAAAATCTTATTACACATCAAAAAATTCATACTGGGGAAAAACCATATAAGTGTAATGAATGTGGAAAAGCTTTCATTCAGATGTCAAACCTTATTAGACACCAGAGAATTCATACTGGAGAGAAACCTTATGCATGTAAAGATTGTTGGAAGGCCTTCAGCCAGAAATCAAATCTCATTGAACATGAGAGAATTCATACTGGAGAAAAACCCTATGAATGTAAGGAATGTGGAAAAGCCTTCAGCCAGAAGCAAAATCTTATTGAACACGAGAAAATTCATACTGGTGAGAAACCTTATGCATGTAATGAATGTGGTAGAGCTTTTTCTCGGATGTCATCTGTTAATCTACATATGAGAAGTCACACAGGGGAGAAACCCTATAAATGTAATAAATGTGGAAAAGCCTTCTCTCAATGCTCAGTATTTATTATACATATGAGAAGTCATACAGGTGAGAAACCCTATGTATGTAGTGAATGTGGAAAAGCATTCTCTCAAAGTTCATCCCTTACTGTACACATGAGAAATCATACAGCTGAGAAACCCTATGAATGTAATGAATGTGGAAAAGCCTTCAGCAGGAAAGAAAATCTCATTACACATCAGAAAATTCATACTGGAGAAAAACCTTATGAATGTAATGAATGTGGGAAAGCTTTTATTCAGATGTCAAACCTCATCCGACACCAGAGAATTCATACCGGTGAAAAACCCTATGCGTGTACAGTATGTGGAAAAGCCTTTAGTCAGAAATCAAATCTCACGGAACATGAAAAAATTCATACTGGAGAGAAACCCTATCATTGTAATCAATGTGGAAAAGCTTTCAGTCAGAGACAAAACCTCCTTGAACATGAAAAAATTCATACTGGAGAGAAACCATTTAAATGTAATGAGTGCGGTAAAGCTTTTTCTCGAATCTCATCCCTTACTCTTCATGTTAGAAGTCATACAGGGGAGAAACCGTATGAATGTAATAAATGTGGAAAAGCCTTCTCTCAATGCTCATTACTTATTATACATATGAGAATTCACACTGGTGAGAAACCCTATGAATGTAATGAATGTGGAAAAGCATTCTCTCAAAGAGCATCCCTTTCTATACATAAGAGAGGTCATACAGGTGAGAAACGCCGAGTGTACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021742:ENSBTAT00000032175:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF127602=Zn_Tnp_IS1595=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development