HsaINT0187758 @ hg38
Intron Retention
Gene
ENSG00000196967 | ZNF585A
Description
zinc finger protein 585A [Source:HGNC Symbol;Acc:HGNC:26305]
Coordinates
chr19:37145540-37155957:-
Coord C1 exon
chr19:37155865-37155957
Coord A exon
chr19:37153607-37155864
Coord C2 exon
chr19:37145540-37153606
Length
2258 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCATGAGTGTATTCCAACAGGAG
3' ss Score
5.08
Exon sequences
Seq C1 exon
GATATCAAGTTCCTGAAGCAGAGGTGGTCATGTTGGAGCAAGGAAAGGAACCATGGGCACTGCAGGGTGAGAGGCCACGTCAGAGCTGCCCAG
Seq A exon
GTGAGTGAAGCGAGTGTGAATCCGGTAGATGGGAGATGGGAGGAAATCTCAGCTGTCTTGAGAAACACCAACACCCTTGGAATACTATTAAGATGCTTTTTCTGGAAAGTTCTGAATGTTTTTGTATTGCTTGATGCCCCCTTGGCCTCTCAGATCACTAAATGCATTCTCCCTGGATGACCTTTGTCATTTATTTTTTGTCACAGCCTGGGTCGCAGCCGGGGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCCCAGCTCACTACAACCCCCGCCTCCTGGGTTCAAGCAATTCTCGTGCCTCAGCCATCCAAGTAACTGGGATTACAGGTGTTTGCCAGCCACCATGCCCAGCTAATCTTTGTACTTTTAGTAGAGGCAGGGTTTCACCATGTTGGCCAGGCTGGTCTCTAACACCTGACCTCAAGTGATCCACCCGTCTAGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACTGCGCCTGGCCGACCTTTGTCACTTCTGTGTTCTTCTTTGGCTTCGTGGATTCTGAATCATGTGCCAGTCTCCCTCATTAAAGATCTTTCTTGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGATCGGGACCACGGTGAAACCCCGTCTCTCCTAAAAATACAAAAAATTAGCCGGGCGCCGTGGTGGATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGATCTTTCTTTCTTGGTTATGCTCATTTTCTCTAACATTCTTCTTTTCCCCTACATTCCCCATAGTCCTAGAGTCTTTCTTTAACCTTCACGCATTCACGGATCTGCTTTCTTTCAAAGTTACTCTGTGTCACCCACTCCCACTCCTGCTAGTCACTTTTATTTCTTTTCTTTTTTCTTTTTTTTCTTTCTTTTTTTTTTTTTACTGTGAGATGCCTCAGAGCTTTCTGTCCAATCACCCTCTCTTTTTGTTTTCTGCAGAGGAGTGGCCATGAAATTTCTTACTTCTTCCCAGTCCTTCATGCCTGGATAAACTGATGACTTTGGGGGTCACTGTTACTTAATCTTTGGGATTATCTTTCTGCTGTCTTTAACATAATTAATCACCCTTCCTGACCTTTTTTCTTGATGTTGCTTGAGTGATTCCACATTGACCAGGGTTCGTTTTTGTTGTTGTTTTTGATTGCTTTATTTTTATAGTTTACCTGATGAGGTTTGAGTTTAATCATAGTCTTCAGTTTAAGACACACTATCATCATGAGTCTGGGTCAGGATTCTCTCTTATTTATGTTTTGATTTATTCCTTTTTCTCTTTCCCCCACACCCATTTTTCTGCCTGTCATAAGCTACTGTTTTATATGATGGAAACATTTTTTATTTCATGCATGTTGTAAGTGAATTAAGAGTTTGGATCATTAGTTTATATGAATGATGCTGTGGTATATATAGTGTTTTTTGCCTTACTTTTTCCACATCTGTCCATGGTGTTATCTGTTCATTTAGTTTATTTCCTCTAACTGCTGAATTGTTTTCCAGAACATTTCCTATCAACATTGTTACTGCCTTCCTCTTCACGTTACTCACCCTCACCCTTTTCTCTGTGTTCAGCCTGGATGAGTCATTTGTACCATACCCCCTAGCCTCTGCTAGCTGTTCTTTGAACTAAAATCACCTGTTTCTCATTTGAGCGGAGTTTAGATTCCAGACCTTATAGCACGGAATCTCTGAAGAGGTTTCTTTCCAAATTGAAAGAAAAGGTCATGATGAAAGTGATGTGAGATTCTATTTTATTCTAGAATAATTGTGACAGATTGGTGACAAATAGAGAGCTATCAGCAGAGAAAATAAATATCAAAATGATGTTGCTTTCATCAAGAAAATATTGACAACAAAGAGGCAATATGACTATAAGGATAGTAGAAAAATAATTCATGTGAACCCAAACATCATTTCTCCTCCCAAAAGACCCCATCAATATGCCTCATTTGGAAATGGTTTAAAGCATAATTTAGATTTATACAGTCATAATAAAAATAATCCTTCAAAGAATGTTAAAAAGATTACCAAATGATAAAATGTCTTCCTATAGTAACCATGAGTGTATTCCAACAG
Seq C2 exon
GAGAGAAATTATGGGACCATAATCAATGTAGAAAAATCCTCAGTTATAAACAAGTATCCTCTCAACCTCAAAAAATGTATCCTGGGGAGAAAGCTTATGAATGCGCCAAATTTGAAAAGATATTCACCCAGAAGTCACAGCTCAAAGTACACCTGAAAGTTCTTGCAGGAGAAAAGCTCTATGTATGCATTGAATGTGGGAAGGCTTTTGTACAGAAGCCAGAATTTATTATACACCAGAAAACCCATATGAGAGAGAAACCCTTTAAATGCAATGAATGTGGAAAATCCTTTTTTCAAGTGTCGTCCCTCTTCAGGCATCAGAGAATTCATACCGGAGAGAAACTCTATGAATGCAGCCAGTGTGGGAAAGGCTTCTCTTATAACTCAGATCTCAGTATACATGAGAAAATTCATACTGGAGAGAGACACCATGAATGCACTGACTGTGGCAAAGCATTCACACAAAAGTCCACACTCAAGATGCATCAGAAAATCCATACAGGCGAGAGATCCTACATCTGTATTGAATGCGGACAGGCCTTCATCCAGAAGACCCATTTGATTGCACACCGAAGAATTCATACTGGAGAAAAACCATATGAGTGCAGTAACTGTGGCAAATCCTTCATTTCCAAGTCACAACTTCAGGTACATCAACGTGTTCACACAAGAGTGAAGCCCTATATATGTACCGAATATGGGAAGGTCTTCAGCAATAATTCCAACCTCGTTACACATAAGAAAGTTCAAAGTAGAGAGAAATCTTCCATATGTACTGAGTGTGGGAAGGCCTTTACCTACAGGTCAGAGTTGATTATTCATCAGAGAATTCACACTGGAGAGAAACCTTATGAATGCAGTGACTGTGGGAAAGCCTTCACTCAGAAGTCAGCACTCACAGTGCATCAGAGAATTCATACAGGAGAAAAATCGTATATATGCATGAAATGTGGACTGGCCTTCATTCAGAAGGCACACTTGATTGCACATCAAATAATTCATACTGGAGAGAAACCTCATAAATGTGGTCACTGTGGGAAATTGTTTACCTCCAAGTCGCAACTCCATGTTCATAAACGAATTCACACAGGAGAAAAGCCCTATATGTGCAATAAATGTGGGAAGGCATTCACCAACCGGTCAAATCTCATTACACATCAGAAAACTCATACAGGAGAGAAATCTTATATATGTTCCAAATGTGGAAAGGCCTTCACCCAGAGGTCAGACTTGATTACACATCAGAGAATCCATACTGGGGAGAAGCCTTATGAATGCAATACTTGTGGAAAAGCCTTCACTCAGAAGTCACACCTCAATATACATCAGAAAATTCACACTGGAGAGAGACAGTATGAATGCCACGAATGTGGGAAAGCCTTCAACCAGAAATCAATACTCATTGTTCATCAGAAAATTCATACAGGAGAGAAACCCTATGTATGCACTGAGTGTGGAAGAGCTTTCATCCGCAAGTCAAACTTTATTACTCATCAAAGAATTCATACTGGAGAGAAGCCTTATGAATGCAGTGACTGTGGGAAGTCCTTTACCTCCAAGTCTCAGCTCCTGGTGCATCAGCCAGTTCACACAGGAGAGAAACCCTATGTGTGTGCCGAGTGCGGGAAGGCCTTTAGTGGCAGGTCAAATCTCAGTAAGCACCAGAAAACTCATACCGGAGAAAAGCCCTACATTTGTTCTGAATGTGGGAAGACCTTTCGACAGAAGTCAGAGTTGATTACACATCACAGAATTCATACTGGAGAGAAACCTTATGAGTGCAGTGACTGTGGGAAGTCTTTCACTAAAAAATCACAGCTCCAAGTGCATCAGCGAATTCACACTGGAGAGAAGCCTTACGTGTGTGCTGAGTGTGGGAAGGCCTTTACTGACAGGTCCAATTTGAATAAACATCAGACAACACACACTGGAGACAAACCCTACAAGTGTGGCATCTGTGGGAAAGGCTTCGTTCAGAAATCAGTGTTCAGCGTCCATCAGAGCAGCCACGCTTGAGAGAAACAGTGTGAGAAAACCCCCCTGAGGGTTGGGTCTGATTGTACACTGTTGCACGCATGCAGCAGAAAAATATGTATATTATTGTAAATAGAAATGACCACAGCAGAATGTCACACATGGCTGTTCTGGAGAGGGCCTCTGAGAAGGCACTGAATGAGGCGAGGGACCCTTCCTACATTGTCACCATCCCCAGTAAACCTTGGGTCATTATTCATACTGACAAGGAACCGAGTCAATTTGGTGAATAGGAAAAGCCTTCTCATGAAAACTACAATAGAATACTGTTACCAAATTCTTCCTAAGAAAGATCGTATTAAGTTAACGATAATCCTGTTTACTGTGGATTAGGTATAGTGCCAACAAATTGAATGATAAAACAACATAATACGTAGTTATTTTGATAGTGATGAATCCTAAGTTATGTGAGTTGTTCGTTGTGGAACACATTGTGTAACAGACTCCTGGGTGTTTTTCTTTCTCATTCGAATCTACCACAGTTGGTCATATCCAACCCTCATTCAGTATTTCTATCAAGAAAGAGATGCTACAAAAAAAAAAAGAAAAAACCTTTATGTATACAGACGTAAACCTCAGAATGTATGTTGAGTCCCCACTGTCATCTACCAAGACTTGCACCCCCCTCATTATCTACCATGACTGTCTCTCAGCCTCACGGGCCCTCAGCACTTTGTGTTTTGACCCCCAGCACCGTGTCTTGTGAACTCCCATCACCTTCAAGAAAGCTTCCGAGGTAAGAATTTTATGGTCATCTGGGACAACTTAAATCTCCCTTCTGCTGTCATAGTTCTTCCAACTCAGTTGCCTTTTTTTTTTTTTCGTACTCATCACTGACTTGAAGCTTAGTATCTGGCTTCCTTAAGGATGTAACTTTCATGTAACAGATTAATAACTTATATGAAAACCAACACAACCATATGTTTAGGGCTGGAAAGGGCCATGACGCCTGGCCATTTTTCCTGTTTTACCTTACTCTTATGTGTGTCACACTTCATCAATTCCGGAAACAGTTTCTGGAGATCTCCTCATTACCTCTTTTACAATCACCTCACTCCAGCATGGTGTCTGTTACCTCTTCCCACTTGTGACAATGTCTAGTAAGGTCCACTCTCCATTCTGTGTGATGACCACTTATTACAACCCTCAGAATAGGGGACAGTGGTGTGCCCCCTGCAATACAATGGTTTCTATCTCCTGATACTTTTATTACACCTCTAGCAGGATGTCTTGTGATCCTCCTTATTGATTTTTCCCTCACGATGATGAACAATTATCTCCCGTTACTCACCTAGCAGTATCTAACTGTCCCTAACACAGCATGTGGGAATGCCCTCAATACGGTGGATGCTGTTAACTTTCTTCCTTCCCCTCAGGCAATGGCGGTGACTTACAATGAACCATAATGTCCACATTTCCCAACTGTATTTTGGAGCCTCTTCTGTCCCCTTCTTTCTAGGACCCCAGTTAAAAAAAAAAAAAACAAAAACTAGCCCAATGTCTGTTGATGCCCATTAATCACTAACACAGTGTCTGACCCCTCCATTAAATTTTGATGGTATCTCTTGGCTCCCCATTGTCCCGTTAACCCAATGTCTGCTGATTCCCAATTTCCCACATTGCTTCATGCGGTTCCTTAGTCACCCTTGGCTACTGTACTTCCCCCAAGATTGCATCTCCATGTTTGCATGGTCATGATCCCTGGAAGATGGTGATGAGGATGAGGTCCCAGCCTCATAGACCTTTTCCTCTGAGTTCCCCCCAAGGCACAATGGAATGATGGACCCAGGGTGGGCCAGGGATGATCTGGAGATCTCAGGAGACCACAAGCTGGGCTTCCTGTCTACTACATGAGTATGGTGTGAGCAGAACAGTGAAAGCTGTCTATGTTGGTTCAAATTCTGGTGCCAACACTGATCCACTTAGGGACCCTCAGCCTGCCCAGAAACCTCCTCTGGGCCTCAATTTTCTCACTTGTAAAATGGGATTATGGGAGAATGAAGTGACTTTTTTTGGGTCACATGATGGATGGGATCCAAGCCAGCAGGGCCCAATGACAGCATCCTGTTAATATTAGTCATCAGTCAACATAAGCATCTGACTATCCTCTGTATGCCCAAGCCTCATGAAGGGAAACAATTTATTGTAAATGACTTTTGATTATTTCTCTTATATATTTATTGTAACAATATTATAATACTTACGTATATGTATATGCATATACCCGTATATACGGAAGGCTTTATTTTTTAGAGTAGTTTTAGGTTCAAAGCAAAATTGGGTAGAAATTACAGAGGTTTCCCATATATCCCCTAATCCACATATGCATAGCCTCCCACATTATCAGCATTCCTCTCAGAGTAGTATATTTGTTACAATTGGTGAACCTCCACTGACACTCATTACCACCCCAAGTCTATAGGTTATATTAGGGTTCATCCTTGGTGTAACACCATAGAATGTGTCTTGTACTTTCTGCTTGTTGGAGCAAGTGGATCATGGCATGTTTCCACTGTTATACACAGAGTAGTTTCACTGCCCTAAAAATCCTCTGTGTTCTGCCTGTCATCCCTTCATCTCCTCTAATCCTGGCAACATTTTTTCTGTCTCCATAGTTTTACCTTTGATCTTTTATATCATATAGTTGAAATTATACAGTGTGTAGCCTTTTCAAATTGACTTCTTTCACTTAGTAATGTGGATTTCAGTTTCCTCCATGTCTTTTCATGGCTTGATAATGCATTTCTTTTTAGAGCCAAATTATGTTCCATCGTCTGGATGTTTATTTATTCACCTACTGAAGGACTGTTGGATGCTTCCTTTTGGCAATTATGAGGAAAGCTGTTATAAATATCTGTGCAGGCTTTTTGTGTGGACATAACTGAAATATTTTTAAAGTTATATTTATTGAGGTATAATTTACATTCAGTAATAGTCACACTTTTTAGTGTAGAGTTCTGAGTTTTGACAGTTGTATCTAATCATGCAATCAACACCACAATCAAGATGAAGAACAGGCCCCTCACTTCCCTAACTTCTTTCCTATCCCTTTTTAGTCCCTTTTCCCACTCCCAGCCCTTGGCAATCACCAGTCTGTTTCCGTCTCTATAGTTCTGCCTTTTCCATAATATTGTATAAGTGGAGTCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTACGTGTATGTATATCTCCTTTTGAGTCGGAGTGCTTTCATTTAATGTGATGTATCTGAGATTCATCCATATGGTTCTATGAAAAACAAATGGAAAATAAGGTGATGAAAAGATGCTCAACATCTTTAATTATCAGGAAAATGTAAATCAAACCACAATGAGATACTACTATAGAATGGCTTTTAGAATGGCTAAAAATGAAAACGTGCCATAAATTGGCAAGAATACAGACCAATGGAAATTTTCATGCATTGCTTGTAGGATTGTAAAACGGTCTGTCCACTATGCACAAAAGTTTGGCAGCTTCTTATACTATTAACCATACATTTATCATATGACTCAGCAACTCCACACTTAGGTATTTACCCTAGATGAAAGAAAAATTCTGTTTACATGAAAACCTATACTCAGATGTTCACAGCAATTGTATAATTGCCCAAATTAGGAAGTAACACAAATGTACATCAGTGGATGAGTGATTAAACAAATTGTGTACACCAATACTATGGAGGGCTGCTCAGACATAAAGAAATGATTTATTGACACTTACTACAACATGGATGAATCTCAAAAGTGCTGTTGTATTTTAGGTAAACCATGTGATAACTTGAATTACATTTGATAAAAGATTTATAAGTGTAAAAACTAGATTTATATATTTTAATTTTATATGTGCCTGTCATTACATACTATAGAAAATTGTGTCTACAGTATGTTATATAGCATATTGTAATATTTATTACTGTATATTCCTTGTGACAATAAAATAGTTTGTATTTTATATAATAGTACCTGTTTTATAGTATATGTTTTATTTTATATGATTACCTAATTTTAATATTTTACATATCAAACTTTCACATAATATTTTGGTTATTTCTACTTTCACGTAGTTGCATTTAATGTTTGTAGTGTAAAGATATAACTACAATAAAAGAGGCCAGAGAGTCTGCAGTTGGAGTTAGTCAACATTTTTATTTGTCAGGCATCTCAATTCTGGCTGTTTTAACATCAAGGATCTTTTCTCTGGCTTTGGGCCTTTGCACCGACTGTTCTGAGAGTGCTCTGCTTCTCCAGTGCCCGTGCATCTTGCTTTCCTCTTCCACCTTTGCAGTGCCTCCATCCCCATCTTATCCTGCCATTGAAGTAACACATCTGTAGAGCTCACTTGCTGCTCCCTTATTTTGTATGATATTTGCATTGCAAATACTATTACTATCTGACCTGATTCAATATTCCTTTTTTTGGTTTCTCATCCCTCTTCCCCACTGGACCATCAGCCTCATGAGAACCAGACTTTGTCTGTCCTGTTTCTGCTGTATACCAGGCGCCCAGCACGGTGCCAGCTCAAAGCAGATGCTCAGTACAAGCTTGTTAAATGGATGAATGAATAATAGCAATAATATCGAGGTTGACCAGATGCCCCGCACAGATTGGTAACATGTGTGGGGAAGTTGGTGGGGTGGGTTTGGGTCCTCTAATTCAAGATTTAATGCCTCCTCCCACCATGGTCCAGCACACCCAGCTCTAACTCCATGTCAGGGCAGTACCAAACTGAGTATCCTACCTACATACATTCCACACTGTTTACAAGATCTAACTTAGCCTCCTCCTGGTCACAGTGGCAGGTCACATAGAGGGGGAAAGGGGCAGGAGTGGGGGATCCATAGGCAGGGGGCCACTCCCATCAGCATCTAGCCTAGCACTTTCTATCCTGCACCCCATTGTCAGTGTCACCTGCCCCACCTCCTCCACTGGAGCAGCCACTGGAAAATATAGAACCCCAGGAGCAAGAGGAATGTGGCAGGGCTGAGGGTTCTGGGGCTCAGGCACCTTGTTGGATAATGGATGTGATGCAGTGTGGCAGACATTGACCCCGTGGCCAAAGTCAGCTTAAAGCCAAGGTTGTCATGGACACTTCCCATAATGCCAGGATGAATCACACCCTCCACCCTCAGCTCTCAAATGGGCTACTAGTGCCAATGTGACTATTTTTTATTTTTATTTTTTTTGAGATGGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGAGTAGCTGCGATTACAGGCACCCACCACCACACCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCCTGACCTCACGATTTGCCCACCTCGGCCACCCAAAGCATTGGGATTACAGGCCTGAGCCACCTCGCCCAACCCAGTGTGACTATTTATGGTATATCCTACACCTCCCCACCACACTCTACTCCACATTCCTCATACCGTACCATACCGTACACCATGCCATAGCATACCACTTACAGTTTTACTTAATTCTATAATTATATTGTTTCTATTAATGGTTTTAAATATAATCAACACAATTATACTTTATAACAAATATCAGAATCCTTGTCATTATTATATGCCTCTAAATTATTAAGATATCATAAATAACAACATATCAATTCTGATGCTAAGAAATCCTCTGTCTCTGCTAGTTTCTGCCACCTTCAGGTGTTTGTATTATATAAACACAGTAGTCCCACCCCTGGGCTGATGTTTTCCACCCTCTGTGAAATCAGCACAATTAGGTTACATCCTTAGTGATTTTATTATGGTGTTATTTTAATATTTATTATAACAAGGAATGCTGCTATTAAAACAAAAAATTGTGCTCTCTGTTTACATTTGTGAAATAGGACAATATAAGAAGCACATTAGTACAATCATTTGAGTTATATTAAGTTTGTGCCTATAATAAATGCCAATCCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196967:ENST00000292841:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0214814=zf-UBP=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains