Special

MmuINT0179789 @ mm9

Intron Retention

Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:50551893-50556635:-
Coord C1 exon
chr7:50556540-50556635
Coord A exon
chr7:50555547-50556539
Coord C2 exon
chr7:50551893-50555546
Length
993 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCATCTCTTTCTGTTTGTAGAAA
3' ss Score
9.24
Exon sequences
Seq C1 exon
GGTATTCCATTCCCAGTCCTGGAGTCATCTTTAGGATGGAAAAAGGAAAGGAGGCACAGACAGCAAAGGCTGAATTCCCAGGCCAGAGATGTCAAG
Seq A exon
GTGAGCCATTGCTTCCCAAGTCGGGTAGATTTCATGATGCCTTTGTCAGTTGTCTCACCAAGTCCTCAGTGGTGGTCACTATTAGGTTGTTTTCTCCTTGGAGTTTTTATTTTTATAATAAATTCAGTCCATTTATCATTGATGTGAGGCGATGTGAGACTTTCTGAAAGATGAGTTTGTGGGATGAGCTTGTCTGTCCATGGAGAGGAGTAAACCTAAGTGGACTACCTCAGGCATTTTCTTCTTACAGTGACCGGTTATATTCCCATGCGTATGTGCACAAGAATTATTTGCACATCTTGTTTGTGAACACCTGGCAAGTTGGTTAATATATTGCTCAAGTAATGGGGAAAGAACTGGTTGTAATTTGTGTCTTCTACTATCTGACTTTTGAATTAGTATATTGTCTTTTGGGTTCTTACTGTCATTTGTGTTGTGTCTATGATTTGCTTTCTGTGTTTGTCTCTGATTTCATTGATTTTCTTTCCTAGACTGGTTCATTTTTTCCAGTTAGTTGTGGCACCTTAGGCTTGGTGTTAATAGGTTTGCCTTGAAGGCTCTGTTTATTCTGAACAAGCAGTTCTCATTGTTGTATTATGATAGACTTCTTAGTCCTTGAGCTTACAGTCTCTCATGCCTTGTTTAGATATGTGAGCACAGTTCCTCTAAGATGGTCCCTTTCCTTCATTTTTGGAGATCAGAAATTGGGATCTTCTTCATTCAAATCAGAAAGGCCTTTTGTTTGACTAATCATTTTTTTCTCTTATGGGCCTCTGAACTATTTTCTCTTGATACTTTATTTTGTTATCTTGCAATTCCTACTTGTTTTTCTTTTTGAATACACAATTTTTTTTCTACTAATTGTTAGTTAGCACCATCAACATCATTAGAACCTGATTTAGGCATTAATGTTCAATCTCAGTCCATCTGTATGATTTATTCATCCTCCATCCTATTCACTCTGCTTATTCCTCCATCTCTTTCTGTTTGTAG
Seq C2 exon
AAAAATCAGGAAATGATACCTTACCACAGAAAGCATCTGGGAAAACATCAGTTTATAGCAATGTGGCAAGTGAAGTGACAAGAGATGGTTCATGGTGTTCCCTTTTACAAGAACTATGGCAGGGTGCTGACATTACAAAGAGAGGTCAACAAAACCAGATTCTACTCTTCCCTCCTGGTTCTTTCCTCAAGAAAACTCTGAGCAAAAATAGTGATCATGAATATCAAAAGCCCAGGGAAACCATTCCTTTGGGACCCTACCTCATTTCAACACAAGAGGGTCTTCCACAATATCACTCACTTCCAAAAAGTTTGGATGTAAGCCTAGGAGCAAATGGTCATAATGAAAGAGATCAGCTCATTGACATTGTTGCATCCAGTCAACTCCTTATACCAGGCTCCTGTAATGCTAACTGTGTGGTTACTCATGGAGGAGAAGAATCATACAGAAGTACTGGGAATGGAGATGTTCTCAGCCATAAACAACCACTGATCTATGGAAACCGTTTTCAGGTGAAAGCAGATCAAAGTTCTCAGTGCCAGGAGGTACTCTATGCCATATCTTTGCATAAACCTGAGATCACTCTCACTGTGGACAGACCTATTGTTTCCTACAATGGTGGAAAGGCTTTCCTTTATGTGTCAGATTCACTGAGCCATCCATTCCAGCTGAAGGTGGACCGTGTAGTTCATACTGGAGGAGACCCTTACAAGTGTAGCAGCTGTGAGAAATCCTTTTGTAATGCAGCTGCACTCCAACAGCACGAGCAAATTCACACAGAAGAGAAACTGTATGTGTGTACTCTGTGTGGAAAAGCCTTCAGTGATGGGTCAGCTTTCTATGAACATGAATTGATTCACAAGAATCACACACCTTTTATCTGTGACATTTGTGGGAAGGCCTTCTTACGTAAATCAGAGTTGACATCCCATAAACAATGTCACAATGGAGAGAAGCCTTACAAATGCAATGACTGTGAGAAGTCATTTAAATTTCCATCCCAACTGAAGGTGCATCATCAGATTCATACGGGTGAGAAGCCTTATGAATGCCGTGAATGTGGGAAGTCATTCAGTAAAACAGCCAAACTCAAGGTGCATCAACGGATTCACACAGGGGAGAAACCTTATGTGTGTTCTCAATGTGGAAAGGCCTTCAATCAGAAATCAATACTAGACCGGCATGAGAAGCTTCACCCTGGGGAGAAGCCTTACAAATGCAATGACTGTGGGAAGTCATTTAATTACCCATCCCAACTGAAGGTGCATTGCCATAGTCACACAGGGGAGAAGCCTTACAAGTGCCATGAGTGTGGGAAATCATTTAACTTTCCATGTGAACTAAAGGTGCATTATCAGAATCACACGGGAGAGAAGCCGTACAAATGCCGTGAATGTTGGAAACTGTTCAGTAAAATGTCCCAACTGAAGGCACATTATCGAGTTCACACAGGAGAAAGACCTTATAAGTGCAGCCACTGTGGGAAAGCCTTCTCTACTAAGGAACAAGTCCAAGAGCATGAGCGAATCCACACAGGAGAGAAACCCTTTGTGTGCACTGAATGTGGAAAAGCCTTCAGTAGCAGGTCATCTTTTCGTAAGCATCAGTTAATTCACACTAAAGAGAAACCTTTTGTCTCTCAGAAATGTGAGACAGGCCTCCAGGAGGCTACTTTGATACCCCATCAGCAACTTCATATTGGTGAGAAGCCTTACAAATGCCCTGATTGTGGGAAGTTGTTTAATTATCCATCCCAATTGAAGTCACATTATCAAATCCACACAGGAGAGAAGCCTTGTAAATGTCCTGACTGTGGGAAATCATTTAGTAAAACATCTCAACTGAAGGCACATTCTCGAATACACACAGGGGAAAGGCCTTATGTGTGTTCTGTGTGTGGGAAGGCCTTCAAACAGTTGTCAACATTGAGTAGACATGAAAAAATTCACATGGTGGAAAAGCCTTACAAATGTAGTTTCTGTGGGAAGTCCTTTTGCTCTCCATCTGAACTGAAGGTGCATCTTCTAATTCACACAGGGGAGAGACCTTATAAATGCAGCAGCTGTTGGAAAGCCTTTTGTACTAAGGTCCAACTCCAAGAACATGAGCGAATTCACACAGGAGAGAGACCTTATGTGTGCACTCATTGTGGGAAAGCCTTTAGAAGCAGGTCAGTTTTCTCTAAACATAAGTTGATTCACAGGAAGGAAACACCTTTTATCTGTGAGAGATGTGGGAAAGTGTTCTTACAGAAGTCAGAGTTGACATCTCATCTACAAACTCATATTGAAGACAAACCTTAAGGAATGTCAAGACTGGAAAATGGTTTAGTCAGATACACAATAGAGTGTGTATCATCAAATTCATACAAGACGCCTTCCAAATGCAGCAACTGGGAAAGTCTTGGCTTCTAATGCCCAACTCTGACAGTATGAACAAATGAGTTCATCTAGGAGAGACCTTTGTGCTCTGAATGTGAAAAAGTCTTCAGTAGCACATTAACTTTATAAAATCAAATGTCTCATACTAGCATGAGACCATTGTCTCTCACAATGTGGGTCACATTTGGTATTGGGTAGAGAAACTCATTGAGTAGGCTTTGGAATGTCATGACTTGGAAATTATTTCTGTATCAGAGATTAGTCCCATCATCAGTTCATAGATGGGGATGCCCTAAGTGTTCTAAATGAAGGAAGGTCCTTAACAGGTCACAATTCAACATATATATTATACAACTCATACCACAATTAGTTTTTTACAGGTGCTGTTCTACATAACAGGTTTTACTGAGAAATGAATTCCTAGCTTATTAGCATATTCCAAAATGAAATTTCTTTATTTACTTGAAGTTCATTTTATGCTGAGATCTAATTGCACATTGCCTAATATTACAGAAAACAAATTTGTTTAATCTATTGATTGTTTATATAGCAAACATGCATGAGGAATGTCACAAATTAATAATGATAAGCACACATTTATATTTGTCTTGTTAAACATGAATTTCATTTCACATTGACCTTGACTAGTTTTAGAAGTGTTTTTGTAGAATGTAAGATAAGATACATTTTACTAAAGTATTGGAAAGTTTAAGGAAATTTAAGTCATTAAGATATTGTCATTAATTAAGTCATTAAGATATCCCCATTTGTTGTGGGAGTCCAGTAAAACCCTTAAGTGCCAGCCATGTAAAGGGTGTTTTTATAAATGGGCATATGTATGTATGTATGTATGTATGAAATATATATATATATGTTTGTAAGTATATGTACACATGTGCCTGTATTTAGTCAGTGCCTGTATGGACTTGTATGTAATCTCAAAATTTTGTGGATTTTTCTATAGAATTAACTGCAAAATAGAAAGCAGTAGTTTATTATTAAAAGGTACATTCATTTATCTTGTATATATATGTATGTACATGTGCTGCTAGGTATATGTGGCTGTCAGATAAGTACATCAATGAGAGTCATTGATCTCGCACCATGTGGATCCTGGGGATTGAATTTGGATTTATTAGACTTGGTAAAGTCATCTTTACCCACCGAGCCATCGTGCTCTGTAGTTATTTTTATTTAACAGTTTCCATATTGAGCTTGCACCATCAATTTTTTTATTATATGGATTTCTTTGAATAAATGAGGTCTTAAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640-Zfp715:NM_027264:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.351 A=NA C2=0.078
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.0)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000040282





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000012796, ENSMUSP00000083175, ENSMUSP00000103620, ENSMUSP00000114600, ENSMUSP00000126156, ENSMUSP00000129988
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:51581883-51586626 
ALTERNATIVE
HsaINT0186305
(ZNF175)
Human
(hg19)
chr19:52085136-52089879 
ALTERNATIVE
HsaINT0186305
(ZNF175)
Rat
(rn6)
chr1:99489251-99493846 
ALTERNATIVE
RnoINT0081836
(LOC102546648)
Cow
(bosTau6)
chr18:57904803-57908948 
ALTERNATIVE
BtaINT0164957
(ZNF175)
Chicken
(galGal4)
chrUn_JH376359:1309-1362 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr4:75480132-75480250 
DreINT0144790
(si:dkey-240n22.7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATTCCCAGGCCAGAGATGTCA

				
R: 
TGCTCCTAGGCTTACATCCAA

				
Band lengths: 
355-1348

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"